BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029836
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   167   8e-40
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             162   3e-38
emb|CAN64192.1| hypothetical protein VITISV_027121 [Vitis vinifera]   157   8e-37
ref|XP_003633300.1| PREDICTED: uncharacterized protein LOC100854...   157   1e-36
emb|CAN66238.1| hypothetical protein VITISV_041838 [Vitis vinifera]   156   1e-36

>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  167 bits (423), Expect = 8e-40
 Identities = 75/111 (67%), Positives = 93/111 (83%)
 Frame = +3

Query: 3   AINDEVDKLKQVGFIRKVDYPDWIANIVAVPKKNGTVRLCVDFTNVNQETPKDSFPLPSI 182
           A+NDEVDKL ++G IR+V YPDW+AN V V KKNG  R+C+DFT++N+  PKDSFPLP I
Sbjct: 479 AVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHI 538

Query: 183 DRLVDQTCGHELLSFMDVYSGYNQILLAEEDQEKTSFITEQGIYCYNVLPF 335
           DRLV+ T G+ELLSFMD +SGYNQI++  EDQEKT FIT++GIYCY V+PF
Sbjct: 539 DRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPF 589


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  162 bits (410), Expect = 3e-38
 Identities = 72/110 (65%), Positives = 92/110 (83%)
 Frame = +3

Query: 6   INDEVDKLKQVGFIRKVDYPDWIANIVAVPKKNGTVRLCVDFTNVNQETPKDSFPLPSID 185
           +NDEVDKL ++G IR+V YP+W+AN V V KKNG  R+C+DFT++N+  PKDSFPLP ID
Sbjct: 37  VNDEVDKLLKIGSIREVQYPEWVANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHID 96

Query: 186 RLVDQTCGHELLSFMDVYSGYNQILLAEEDQEKTSFITEQGIYCYNVLPF 335
           RLV+ T G+ELL+FMD +SG NQI++  EDQEKTSFIT++GIYCY V+PF
Sbjct: 97  RLVESTAGNELLTFMDAFSGSNQIMMNPEDQEKTSFITDRGIYCYKVMPF 146


>emb|CAN64192.1| hypothetical protein VITISV_027121 [Vitis vinifera]
          Length = 1023

 Score =  157 bits (397), Expect = 8e-37
 Identities = 66/110 (60%), Positives = 89/110 (80%)
 Frame = +3

Query: 6   INDEVDKLKQVGFIRKVDYPDWIANIVAVPKKNGTVRLCVDFTNVNQETPKDSFPLPSID 185
           I DE+DKL + GFIR+V++PDW+AN+V +PKK G  R+CVD+TN+N   PKDSFPLP ID
Sbjct: 37  IRDEIDKLLEAGFIREVEHPDWLANVVVIPKKEGKWRVCVDYTNLNNACPKDSFPLPRID 96

Query: 186 RLVDQTCGHELLSFMDVYSGYNQILLAEEDQEKTSFITEQGIYCYNVLPF 335
           +++D T G  +LSF+D +SGY+QIL+A  D+EKT+FIT  G+YCY V+PF
Sbjct: 97  QIIDSTAGQGMLSFLDAFSGYHQILMAPADEEKTAFITPYGLYCYKVMPF 146


>ref|XP_003633300.1| PREDICTED: uncharacterized protein LOC100854777 [Vitis vinifera]
          Length = 2323

 Score =  157 bits (396), Expect = 1e-36
 Identities = 69/110 (62%), Positives = 87/110 (79%)
 Frame = +3

Query: 6    INDEVDKLKQVGFIRKVDYPDWIANIVAVPKKNGTVRLCVDFTNVNQETPKDSFPLPSID 185
            + +E+ K   VGF+  V+YP+W+AN+V VPKKNG VR+CVDF ++N+ +PKD FPLP ID
Sbjct: 1295 VKEEIQKQLSVGFLSVVEYPEWLANVVPVPKKNGKVRVCVDFRDLNKASPKDDFPLPHID 1354

Query: 186  RLVDQTCGHELLSFMDVYSGYNQILLAEEDQEKTSFITEQGIYCYNVLPF 335
             LVD T GH +LSFMD +SGY+QIL+A ED EKTSFITE G YCY V+PF
Sbjct: 1355 MLVDSTAGHSMLSFMDGFSGYSQILMAPEDMEKTSFITEWGTYCYRVMPF 1404


>emb|CAN66238.1| hypothetical protein VITISV_041838 [Vitis vinifera]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36
 Identities = 68/110 (61%), Positives = 88/110 (80%)
 Frame = +3

Query: 6   INDEVDKLKQVGFIRKVDYPDWIANIVAVPKKNGTVRLCVDFTNVNQETPKDSFPLPSID 185
           I DE+DKL +VGFIR+VDYPDW+AN+V VPKK G  R+CVD+TN+N   PKDSFPLP ID
Sbjct: 37  IRDEIDKLLEVGFIREVDYPDWLANVVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRID 96

Query: 186 RLVDQTCGHELLSFMDVYSGYNQILLAEEDQEKTSFITEQGIYCYNVLPF 335
           ++VD T G  +LSF+D +SGY+QI ++  D+EKT+FIT   +YCY V+PF
Sbjct: 97  QIVDSTAGQGMLSFLDAFSGYHQIPMSLADEEKTAFITSHDLYCYKVMPF 146