BLASTX nr result
ID: Coptis24_contig00029836
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00029836 (336 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi... 167 8e-40 gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata] 162 3e-38 emb|CAN64192.1| hypothetical protein VITISV_027121 [Vitis vinifera] 157 8e-37 ref|XP_003633300.1| PREDICTED: uncharacterized protein LOC100854... 157 1e-36 emb|CAN66238.1| hypothetical protein VITISV_041838 [Vitis vinifera] 156 1e-36 >gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1466 Score = 167 bits (423), Expect = 8e-40 Identities = 75/111 (67%), Positives = 93/111 (83%) Frame = +3 Query: 3 AINDEVDKLKQVGFIRKVDYPDWIANIVAVPKKNGTVRLCVDFTNVNQETPKDSFPLPSI 182 A+NDEVDKL ++G IR+V YPDW+AN V V KKNG R+C+DFT++N+ PKDSFPLP I Sbjct: 479 AVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHI 538 Query: 183 DRLVDQTCGHELLSFMDVYSGYNQILLAEEDQEKTSFITEQGIYCYNVLPF 335 DRLV+ T G+ELLSFMD +SGYNQI++ EDQEKT FIT++GIYCY V+PF Sbjct: 539 DRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPF 589 >gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata] Length = 1103 Score = 162 bits (410), Expect = 3e-38 Identities = 72/110 (65%), Positives = 92/110 (83%) Frame = +3 Query: 6 INDEVDKLKQVGFIRKVDYPDWIANIVAVPKKNGTVRLCVDFTNVNQETPKDSFPLPSID 185 +NDEVDKL ++G IR+V YP+W+AN V V KKNG R+C+DFT++N+ PKDSFPLP ID Sbjct: 37 VNDEVDKLLKIGSIREVQYPEWVANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHID 96 Query: 186 RLVDQTCGHELLSFMDVYSGYNQILLAEEDQEKTSFITEQGIYCYNVLPF 335 RLV+ T G+ELL+FMD +SG NQI++ EDQEKTSFIT++GIYCY V+PF Sbjct: 97 RLVESTAGNELLTFMDAFSGSNQIMMNPEDQEKTSFITDRGIYCYKVMPF 146 >emb|CAN64192.1| hypothetical protein VITISV_027121 [Vitis vinifera] Length = 1023 Score = 157 bits (397), Expect = 8e-37 Identities = 66/110 (60%), Positives = 89/110 (80%) Frame = +3 Query: 6 INDEVDKLKQVGFIRKVDYPDWIANIVAVPKKNGTVRLCVDFTNVNQETPKDSFPLPSID 185 I DE+DKL + GFIR+V++PDW+AN+V +PKK G R+CVD+TN+N PKDSFPLP ID Sbjct: 37 IRDEIDKLLEAGFIREVEHPDWLANVVVIPKKEGKWRVCVDYTNLNNACPKDSFPLPRID 96 Query: 186 RLVDQTCGHELLSFMDVYSGYNQILLAEEDQEKTSFITEQGIYCYNVLPF 335 +++D T G +LSF+D +SGY+QIL+A D+EKT+FIT G+YCY V+PF Sbjct: 97 QIIDSTAGQGMLSFLDAFSGYHQILMAPADEEKTAFITPYGLYCYKVMPF 146 >ref|XP_003633300.1| PREDICTED: uncharacterized protein LOC100854777 [Vitis vinifera] Length = 2323 Score = 157 bits (396), Expect = 1e-36 Identities = 69/110 (62%), Positives = 87/110 (79%) Frame = +3 Query: 6 INDEVDKLKQVGFIRKVDYPDWIANIVAVPKKNGTVRLCVDFTNVNQETPKDSFPLPSID 185 + +E+ K VGF+ V+YP+W+AN+V VPKKNG VR+CVDF ++N+ +PKD FPLP ID Sbjct: 1295 VKEEIQKQLSVGFLSVVEYPEWLANVVPVPKKNGKVRVCVDFRDLNKASPKDDFPLPHID 1354 Query: 186 RLVDQTCGHELLSFMDVYSGYNQILLAEEDQEKTSFITEQGIYCYNVLPF 335 LVD T GH +LSFMD +SGY+QIL+A ED EKTSFITE G YCY V+PF Sbjct: 1355 MLVDSTAGHSMLSFMDGFSGYSQILMAPEDMEKTSFITEWGTYCYRVMPF 1404 >emb|CAN66238.1| hypothetical protein VITISV_041838 [Vitis vinifera] Length = 225 Score = 156 bits (395), Expect = 1e-36 Identities = 68/110 (61%), Positives = 88/110 (80%) Frame = +3 Query: 6 INDEVDKLKQVGFIRKVDYPDWIANIVAVPKKNGTVRLCVDFTNVNQETPKDSFPLPSID 185 I DE+DKL +VGFIR+VDYPDW+AN+V VPKK G R+CVD+TN+N PKDSFPLP ID Sbjct: 37 IRDEIDKLLEVGFIREVDYPDWLANVVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRID 96 Query: 186 RLVDQTCGHELLSFMDVYSGYNQILLAEEDQEKTSFITEQGIYCYNVLPF 335 ++VD T G +LSF+D +SGY+QI ++ D+EKT+FIT +YCY V+PF Sbjct: 97 QIVDSTAGQGMLSFLDAFSGYHQIPMSLADEEKTAFITSHDLYCYKVMPF 146