BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029789
         (406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containi...   108   5e-22
emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]   108   6e-22
ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containi...   101   6e-20
ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containi...   101   6e-20
ref|XP_002512699.1| pentatricopeptide repeat-containing protein,...    99   4e-19

>ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 662

 Score =  108 bits (270), Expect = 5e-22
 Identities = 51/84 (60%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
 Frame = +1

Query: 160 RVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLTASR--Q 333
           ++ DEIP ++TFAWN +IQ HL+N D    +  Y QMLLRGVRPDKHT+PR+LTA+R   
Sbjct: 48  QLFDEIPVSNTFAWNNLIQTHLTNGDSDRVVSTYRQMLLRGVRPDKHTIPRILTAARHTS 107

Query: 334 AFFVGKQIHGHALKLGFSSDKYVV 405
           +F  GKQ+HGHALKLG SS+ YV+
Sbjct: 108 SFSFGKQVHGHALKLGLSSESYVI 131


>emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]
          Length = 734

 Score =  108 bits (269), Expect = 6e-22
 Identities = 51/84 (60%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
 Frame = +1

Query: 160 RVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLTASR--Q 333
           ++ DEIP ++TFAWN +IQ HL+N D    +  Y QMLLRGVRPDKHT+PR+LTA+R   
Sbjct: 143 QLFDEIPVSNTFAWNNLIQTHLTNGDSGRVVSTYRQMLLRGVRPDKHTIPRILTAARHTS 202

Query: 334 AFFVGKQIHGHALKLGFSSDKYVV 405
           +F  GKQ+HGHALKLG SS+ YV+
Sbjct: 203 SFSFGKQVHGHALKLGLSSESYVI 226


>ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 429

 Score =  101 bits (252), Expect = 6e-20
 Identities = 52/90 (57%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
 Frame = +1

Query: 142 NHSTALRVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLT 321
           N   A +V D+IP  DTFAWN +IQ HL+N DL   +  Y QML RGVRPDKHTLPR++ 
Sbjct: 8   NLCVAHQVFDDIPIWDTFAWNNLIQTHLTNGDLGHVISTYRQMLFRGVRPDKHTLPRIIC 67

Query: 322 ASRQ--AFFVGKQIHGHALKLGFSSDKYVV 405
           A+RQ     VGKQ+H  A KLGFSS+ YV+
Sbjct: 68  ATRQYGDLQVGKQLHAQAFKLGFSSNLYVL 97


>ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 629

 Score =  101 bits (252), Expect = 6e-20
 Identities = 52/90 (57%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
 Frame = +1

Query: 142 NHSTALRVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLT 321
           N   A +V D+IP  DTFAWN +IQ HL+N DL   +  Y QML RGVRPDKHTLPR++ 
Sbjct: 8   NLCVAHQVFDDIPIWDTFAWNNLIQTHLTNGDLGHVISTYRQMLFRGVRPDKHTLPRIIC 67

Query: 322 ASRQ--AFFVGKQIHGHALKLGFSSDKYVV 405
           A+RQ     VGKQ+H  A KLGFSS+ YV+
Sbjct: 68  ATRQYGDLQVGKQLHAQAFKLGFSSNLYVL 97


>ref|XP_002512699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548660|gb|EEF50151.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 686

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 50/85 (58%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
 Frame = +1

Query: 157 LRVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLTASRQA 336
           L+ LDEIP +DTFAWN +I +HL+N D   AL +Y  MLLRG  PD+ T PR+L ASR +
Sbjct: 51  LQPLDEIPLSDTFAWNNLIHSHLTNRDPFSALSIYLHMLLRGALPDRRTFPRVLNASRLS 110

Query: 337 --FFVGKQIHGHALKLGFSSDKYVV 405
              F+GKQIH  ALK GFSSD YV+
Sbjct: 111 TNLFLGKQIHAQALKFGFSSDPYVI 135