BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029761
         (286 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...    60   2e-07
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...    58   7e-07
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...    58   9e-07
ref|XP_002534512.1| conserved hypothetical protein [Ricinus comm...    57   2e-06
ref|NP_566322.1| F-box protein [Arabidopsis thaliana] gi|7526578...    55   6e-06

>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
           gi|222843314|gb|EEE80861.1| f-box family protein
           [Populus trichocarpa]
          Length = 408

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
 Frame = -3

Query: 254 GHVNVWVVKEYGIWESWIKHCNISXXXXXXXXXXXPKRF------------RPLLIQENG 111
           G + +WV+KEY + ESW+K  NI             +              R L + +NG
Sbjct: 299 GRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNLVRPLKIWKNASNGRAVRALCVLKNG 358

Query: 110 EILVEINNGALVSYNQKRKSYREIIINGLPGSFKAV 3
           EIL+E  N ALVSY+ K+  +++I + G P  F+ V
Sbjct: 359 EILLEYKNRALVSYDPKKGKFKDIDLQGTPKWFQTV 394


>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
           gi|222861279|gb|EEE98821.1| f-box family protein
           [Populus trichocarpa]
          Length = 422

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
 Frame = -3

Query: 254 GHVNVWVVKEYGIWESWIKHCNISXXXXXXXXXXXPKRFR------------PLLIQENG 111
           G + +WV+KEY + ESW+K  NI             ++ +             L + +NG
Sbjct: 300 GRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNQDRQLKIWKNSSNGRVVGALCVLKNG 359

Query: 110 EILVEINNGALVSYNQKRKSYREIIINGLPGSFKAV 3
           EIL+E  N  LVSY+ K   +++I + G P  F+ V
Sbjct: 360 EILLEYKNRVLVSYDPKNGKFKDIELQGAPNWFQTV 395


>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
           gi|147785390|emb|CAN68678.1| hypothetical protein
           VITISV_041941 [Vitis vinifera]
          Length = 409

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
 Frame = -3

Query: 257 DGHVNVWVVKEYGIWESWIKHCNI------------SXXXXXXXXXXXPKRFRPLLIQEN 114
           +G + VWV+KEY + ESWIK  NI            +            +  R L + +N
Sbjct: 298 NGKLEVWVMKEYDVKESWIKEFNIGAHLPKGLKQDVNRPHRIWRNAPKGRGVRLLCLLKN 357

Query: 113 GEILVEINNGALVSYNQKRKSYREIIINGLPGSFK 9
           GEIL+E     LVSYN +R  ++++ + GLP  F+
Sbjct: 358 GEILLEYKGRVLVSYNPERGKFKDLTLKGLPNWFQ 392


>ref|XP_002534512.1| conserved hypothetical protein [Ricinus communis]
           gi|223525141|gb|EEF27869.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 383

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
 Frame = -3

Query: 254 GHVNVWVVKEYGIWESWIKHCNISXXXXXXXXXXXPKRFRP-----------LLIQENGE 108
           G   VWV+K+YG+ ESWIK  +I               FR            L + +NGE
Sbjct: 281 GSFEVWVMKDYGLKESWIKEFSIGVYLPKGLEQKIDPSFRVSKFYRRAFTRILCVLKNGE 340

Query: 107 ILVEINNGALVSYNQKRKSYREIIINGLPGSFKA 6
           IL+E    ALVSY  +  ++++I + G+P  F+A
Sbjct: 341 ILLEYGRRALVSYEARFGTFKDITVPGMPNWFEA 374


>ref|NP_566322.1| F-box protein [Arabidopsis thaliana]
           gi|75265789|sp|Q9SFC7.1|FB135_ARATH RecName: Full=F-box
           protein At3g07870 gi|6648199|gb|AAF21197.1|AC013483_21
           unknown protein [Arabidopsis thaliana]
           gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
           [Arabidopsis thaliana] gi|109134141|gb|ABG25068.1|
           At3g07870 [Arabidopsis thaliana]
           gi|332641092|gb|AEE74613.1| F-box protein [Arabidopsis
           thaliana]
          Length = 417

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
 Frame = -3

Query: 263 GRDGHVNVWVVKEYGIWESWIKHC------------NISXXXXXXXXXXXPKRFRPLLIQ 120
           G  G +++WV+K YG+ ESW K              N+             K  R L + 
Sbjct: 303 GNYGKLDIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLL 362

Query: 119 ENGEILVEINNGALVSYNQKRKSYREIIINGLPGSFKAV 3
           ENGEIL+E  +  LV+Y+ K   +++++ +GLP  F  V
Sbjct: 363 ENGEILLEYKSRVLVAYDPKLGKFKDLLFHGLPNWFHTV 401