BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029758
         (410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containi...   144   7e-33
ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containi...   142   4e-32
ref|XP_002523877.1| pentatricopeptide repeat-containing protein,...   140   8e-32
ref|XP_003596871.1| Pentatricopeptide repeat-containing protein ...   135   3e-30
ref|XP_003596877.1| Pentatricopeptide repeat-containing protein ...   135   4e-30

>ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 313

 Score =  144 bits (363), Expect = 7e-33
 Identities = 66/118 (55%), Positives = 96/118 (81%)
 Frame = +2

Query: 2   YIPLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIF 181
           +IP + +L++SC S ++L+ L+++HARIIT+GI  HDF+RAKL++SYA+C QM +A+YIF
Sbjct: 6   HIPSFATLLDSCASKRDLQKLKQIHARIITVGISRHDFIRAKLVASYASCAQMSQASYIF 65

Query: 182 SVTNRHSTFLYNTVIRGYAALNHFRDSMNVYSQMRFHGKRHDRHTLPSVLKSCAGLSA 355
           S+TNR  TFLYN++IRGY++L  F  S++++ QM F  K  D +TLP+VLKSC+GLSA
Sbjct: 66  SLTNRRPTFLYNSLIRGYSSLFLFSQSLSIFCQMLFAHKPIDCYTLPAVLKSCSGLSA 123


>ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 315

 Score =  142 bits (357), Expect = 4e-32
 Identities = 68/133 (51%), Positives = 93/133 (69%)
 Frame = +2

Query: 5   IPLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIFS 184
           +P Y +L+++C+S+K+LKNL+++HA  ITLGI  +DF+R+KL+SSYA C Q+HEA  +FS
Sbjct: 8   VPFYATLLDACSSSKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLHEANILFS 67

Query: 185 VTNRHSTFLYNTVIRGYAALNHFRDSMNVYSQMRFHGKRHDRHTLPSVLKSCAGLSAXXX 364
            T R  TFL+N++IR Y++LN F  S+ ++ QM    K  DRHTLP VLKSCAGLSA   
Sbjct: 68  FTIRQPTFLFNSLIRAYSSLNLFSQSLCIFRQMLLARKPFDRHTLPVVLKSCAGLSALRL 127

Query: 365 XXXXXXXXXXNGF 403
                     NGF
Sbjct: 128 GQQVHGAVLVNGF 140


>ref|XP_002523877.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536965|gb|EEF38603.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 302

 Score =  140 bits (354), Expect = 8e-32
 Identities = 69/135 (51%), Positives = 95/135 (70%)
 Frame = +2

Query: 5   IPLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIFS 184
           IPLY SLI++C +TKN   L ++HA+ IT GI++ DF+R+KL+S+YA+C QM +AA +FS
Sbjct: 4   IPLYASLIDACITTKNFTTLIQIHAQTITNGIYHRDFIRSKLVSAYASCTQMRQAALLFS 63

Query: 185 VTNRHSTFLYNTVIRGYAALNHFRDSMNVYSQMRFHGKRHDRHTLPSVLKSCAGLSAXXX 364
            TNR +TFL+N++IR YA+LN F  S++ + +M    K  DRHTLPSVLKSCAGLSA   
Sbjct: 64  FTNRQTTFLFNSLIRAYASLNLFSHSLSFFRRMLDACKPIDRHTLPSVLKSCAGLSAVRL 123

Query: 365 XXXXXXXXXXNGFSY 409
                     NG ++
Sbjct: 124 GQQVHGILLINGLAF 138


>ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124359886|gb|ABD32760.2| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355485919|gb|AES67122.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 316

 Score =  135 bits (341), Expect = 3e-30
 Identities = 64/133 (48%), Positives = 91/133 (68%)
 Frame = +2

Query: 8   PLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIFSV 187
           PLY +L+  C S+KN+ +L+ +HAR I LGI + DF+R KL+S YA+C ++H+A  +FS 
Sbjct: 9   PLYATLLNKCFSSKNINSLKIIHARTIRLGISHDDFIRTKLVSCYASCSKLHQANILFSF 68

Query: 188 TNRHSTFLYNTVIRGYAALNHFRDSMNVYSQMRFHGKRHDRHTLPSVLKSCAGLSAXXXX 367
           TNR  TFLYN++IR Y +LN F+++++++ +MR   K  D HTLP VLKSCAGLSA    
Sbjct: 69  TNRKPTFLYNSLIRAYLSLNLFKETLSIFREMRLSYKPFDCHTLPLVLKSCAGLSALRLG 128

Query: 368 XXXXXXXXXNGFS 406
                    NGF+
Sbjct: 129 KQVHGAVLVNGFA 141


>ref|XP_003596877.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240912|gb|ABD32770.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355485925|gb|AES67128.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 316

 Score =  135 bits (339), Expect = 4e-30
 Identities = 64/133 (48%), Positives = 91/133 (68%)
 Frame = +2

Query: 8   PLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIFSV 187
           PLY +L+  C S+KN+ +L+ +HAR I LGI + DF+R KL+S YA+C ++H+A  +FS 
Sbjct: 9   PLYATLLNKCFSSKNINSLKIIHARTIRLGISHDDFIRTKLVSCYASCSKLHQANILFSF 68

Query: 188 TNRHSTFLYNTVIRGYAALNHFRDSMNVYSQMRFHGKRHDRHTLPSVLKSCAGLSAXXXX 367
           TNR  TFLYN++IR Y +LN F+++++++ +MR   K  D HTLP VLKSCAGLSA    
Sbjct: 69  TNRKPTFLYNSLIRAYLSLNLFKETLSLFREMRLSYKPFDCHTLPLVLKSCAGLSALRLG 128

Query: 368 XXXXXXXXXNGFS 406
                    NGF+
Sbjct: 129 KQVHGAVLVNGFA 141