BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029739
         (1025 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptas...   199   4e-76
emb|CAN73467.1| hypothetical protein VITISV_043900 [Vitis vinifera]   193   1e-74
emb|CAN60449.1| hypothetical protein VITISV_036155 [Vitis vinifera]   186   2e-73
gb|AAF13073.1|AC011621_1 putative retroelement pol polyprotein [...   189   1e-72
gb|ACY01928.1| hypothetical protein [Beta vulgaris]                   196   2e-72

>gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc
            finger, CCHC-type; Peptidase aspartic, active site;
            Polynucleotidyl transferase, Ribonuclease H fold
            [Medicago truncatula]
          Length = 1297

 Score =  199 bits (507), Expect(2) = 4e-76
 Identities = 93/174 (53%), Positives = 118/174 (67%)
 Frame = -1

Query: 524  GKTAILVIVDRLSKYTHFSTLTHPYTATSVAEVFVRDIARLHGMPRTIVSDRDPIFLSAF 345
            G  A+LV+VDRLSKY+HF  L HPYTA  +A+VF+R++ RLHG+P +IVSDRDPIF+S F
Sbjct: 950  GYEAVLVVVDRLSKYSHFILLKHPYTAKVIADVFIREVVRLHGIPLSIVSDRDPIFMSNF 1009

Query: 344  WEAFFSLQGTQLCRSSVYHPQSDGQTEVTNHTLECYLHCFASQNPHD*TRWLPWPELWYN 165
            W+  F LQGT+L  S  YHP++DGQTEV N  LE YL CF +  P +   W+PW E W+N
Sbjct: 1010 WKELFKLQGTKLKMSIAYHPETDGQTEVVNRCLETYLRCFIADQPKNWASWIPWAEYWFN 1069

Query: 164  TTYHFAIQMTPFQVVYSRPPLSIFAYLPGSTVVHVVYVALWDCDRTLHLLKAHL 3
            T+YH A   TPF++VY RPP  I  ++ G T V  V   L D D  L  L+  L
Sbjct: 1070 TSYHAATGHTPFEMVYGRPPPVITRWVQGETRVEAVQRELLDRDEALKQLREQL 1123



 Score =  112 bits (281), Expect(2) = 4e-76
 Identities = 70/163 (42%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
 Frame = -3

Query: 1008 ADALSHVHEXXXXXXXXXXXXXXXXXXTRECNSTDSMCA-IIHKIQHSSSPKKHYSYVNE 832
            ADALS V E                   RE  S DS    II  +Q  +S +  Y     
Sbjct: 786  ADALSRVREDGELCQGITSVQWKDEKLLREELSRDSQLQKIIGDLQRDASSRPGYMLKQG 845

Query: 831  --RNKGRIVVVPSSSWCSKLLHEFHATPAGGHSGFLRTYKRLQVNFY*PSMKRDTKTFVI 658
                +GR+VV   S     LL EFH+TP GGHSGF RTY+RL  N Y   MK   + +V 
Sbjct: 846  VLLYEGRLVVSSKSVMIPTLLAEFHSTPQGGHSGFYRTYRRLAANVYWVGMKNTVQEYVR 905

Query: 657  HCDVCQRNKVEAISPPGLLNPLSIPDDVWIDISVDFIEGLRSS 529
             CD CQR K  A SP GLL PL +PD +W D+S+DFI GL  S
Sbjct: 906  SCDTCQRQKYLASSPGGLLQPLPVPDRIWEDLSMDFIMGLPKS 948


>emb|CAN73467.1| hypothetical protein VITISV_043900 [Vitis vinifera]
          Length = 1593

 Score =  193 bits (490), Expect(2) = 1e-74
 Identities = 91/174 (52%), Positives = 115/174 (66%)
 Frame = -1

Query: 524  GKTAILVIVDRLSKYTHFSTLTHPYTATSVAEVFVRDIARLHGMPRTIVSDRDPIFLSAF 345
            GKT+I+V+VDRLSK  HF  + HPYTA ++A  FV  + +LHGMPR+I+SDRDP+F+S F
Sbjct: 998  GKTSIMVVVDRLSKSAHFIAIAHPYTAKTLANKFVEGVVKLHGMPRSIISDRDPVFISNF 1057

Query: 344  WEAFFSLQGTQLCRSSVYHPQSDGQTEVTNHTLECYLHCFASQNPHD*TRWLPWPELWYN 165
            W+ F  L GT+L  +S YHPQSDGQTEV N  +E YL CF    P      LPW E WYN
Sbjct: 1058 WQEFLKLSGTKLRMTSAYHPQSDGQTEVVNRCIEQYLRCFVHHKPRHWNSLLPWAEYWYN 1117

Query: 164  TTYHFAIQMTPFQVVYSRPPLSIFAYLPGSTVVHVVYVALWDCDRTLHLLKAHL 3
            TTYH +  MTPFQ +Y RPP +I +Y  GS  +  +   +   +  L  LKAHL
Sbjct: 1118 TTYHSSTGMTPFQALYGRPPPAIPSYEIGSCPIEELDDQMTARNELLQELKAHL 1171



 Score =  114 bits (285), Expect(2) = 1e-74
 Identities = 60/117 (51%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
 Frame = -3

Query: 870  SSSPKKHYSYVNER--NKGRIVVVPSSSWCSKLLHEFHATPAGGHSGFLRTYKRLQVNFY 697
            +  P++ Y + N       RIVV P S     LL EFH TP GGHS  LRTYKRL   FY
Sbjct: 881  TKQPRQPYQWRNGLVCYNNRIVVPPGSPLIHCLLREFHDTPMGGHSRILRTYKRLSQQFY 940

Query: 696  *PSMKRDTKTFVIHCDVCQRNKVEAISPPGLLNPLSIPDDVWIDISVDFIEGLRSSN 526
             PSM+R    +V  CDVCQ+ K E +SP GLL PL IP  VW DI++DFI+GL  S+
Sbjct: 941  WPSMRRSVHQYVAACDVCQKAKAETMSPAGLLQPLPIPCQVWDDITMDFIDGLPRSD 997


>emb|CAN60449.1| hypothetical protein VITISV_036155 [Vitis vinifera]
          Length = 647

 Score =  186 bits (473), Expect(2) = 2e-73
 Identities = 93/174 (53%), Positives = 111/174 (63%)
 Frame = -1

Query: 524 GKTAILVIVDRLSKYTHFSTLTHPYTATSVAEVFVRDIARLHGMPRTIVSDRDPIFLSAF 345
           GK  ILV+VDRLSK  HF  LTHP++A  VAE FV  + +LHGMP +I+SDRDPIF+S F
Sbjct: 286 GKNTILVVVDRLSKSAHFLALTHPFSAKMVAEKFVDGVIKLHGMPSSIISDRDPIFISNF 345

Query: 344 WEAFFSLQGTQLCRSSVYHPQSDGQTEVTNHTLECYLHCFASQNPHD*TRWLPWPELWYN 165
           W  FF L GTQL  SS YHPQ+DGQTEV N  +E YL C   Q P      L W + WYN
Sbjct: 346 WHEFFKLSGTQLKMSSAYHPQTDGQTEVINRCVEQYLRCLVHQQPRKWYSLLSWADFWYN 405

Query: 164 TTYHFAIQMTPFQVVYSRPPLSIFAYLPGSTVVHVVYVALWDCDRTLHLLKAHL 3
             YH +  M+PFQ +Y RPP  I  Y  GS++V+ V   L   D  LH LK +L
Sbjct: 406 IAYHASTSMSPFQALYGRPPPMIPHYQLGSSLVNEVNQNLASRDDLLHQLKLNL 459



 Score =  116 bits (291), Expect(2) = 2e-73
 Identities = 62/125 (49%), Positives = 75/125 (60%), Gaps = 4/125 (3%)
 Frame = -3

Query: 879 IQHSSSPKKHYSYVNERN----KGRIVVVPSSSWCSKLLHEFHATPAGGHSGFLRTYKRL 712
           I   ++ K    Y N +     K R+VV P S   ++LL EFH +P GGHSG LRTYKR+
Sbjct: 164 ISKLAATKPGLPYTNRQGLTFYKNRVVVPPQSHIPNQLLREFHDSPLGGHSGVLRTYKRI 223

Query: 711 QVNFY*PSMKRDTKTFVIHCDVCQRNKVEAISPPGLLNPLSIPDDVWIDISVDFIEGLRS 532
              FY PSM R    +V  CDVCQR K   +SP GLL PL IP  VW DI++DFIEGL  
Sbjct: 224 AQQFYWPSMYRMVNEYVSSCDVCQRAKASTLSPAGLLQPLPIPCQVWDDITMDFIEGLPP 283

Query: 531 SNREN 517
           S  +N
Sbjct: 284 SQGKN 288


>gb|AAF13073.1|AC011621_1 putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1661

 Score =  189 bits (480), Expect(2) = 1e-72
 Identities = 85/142 (59%), Positives = 101/142 (71%)
 Frame = -1

Query: 512  ILVIVDRLSKYTHFSTLTHPYTATSVAEVFVRDIARLHGMPRTIVSDRDPIFLSAFWEAF 333
            ILV+VDRLSKY+HF  L HP+TA +V E F+RD+ +LHG P T+VSDRD IFLS FW   
Sbjct: 1288 ILVVVDRLSKYSHFIPLKHPFTAKTVVEAFIRDVVKLHGFPNTLVSDRDRIFLSGFWSEL 1347

Query: 332  FSLQGTQLCRSSVYHPQSDGQTEVTNHTLECYLHCFASQNPHD*TRWLPWPELWYNTTYH 153
            F LQGT L +S+ YHPQ+DGQTEV N  LE YL CFA + P    +WLPW E WYNT+YH
Sbjct: 1348 FKLQGTGLQKSTAYHPQTDGQTEVVNRCLESYLRCFAGRRPTSWFQWLPWAEYWYNTSYH 1407

Query: 152  FAIQMTPFQVVYSRPPLSIFAY 87
             A + TPFQ VY R P  +  Y
Sbjct: 1408 SATKTTPFQAVYGREPPVLLRY 1429



 Score =  111 bits (277), Expect(2) = 1e-72
 Identities = 48/104 (46%), Positives = 68/104 (65%)
 Frame = -3

Query: 825  KGRIVVVPSSSWCSKLLHEFHATPAGGHSGFLRTYKRLQVNFY*PSMKRDTKTFVIHCDV 646
            KG +V+   S +  K+L +FH +P GGH G L+T+KRL    Y   +++D   ++  C +
Sbjct: 1184 KGCLVIPVGSPFIPKMLEKFHTSPIGGHEGALKTFKRLTSEVYWRGLRKDVVNYIKGCQI 1243

Query: 645  CQRNKVEAISPPGLLNPLSIPDDVWIDISVDFIEGLRSSNRENC 514
            CQ NK   +SP GLL+PL IP  +W D+S+DF+EGL SSNR NC
Sbjct: 1244 CQENKYSTLSPAGLLSPLPIPQQIWSDVSLDFVEGLPSSNRFNC 1287


>gb|ACY01928.1| hypothetical protein [Beta vulgaris]
          Length = 1583

 Score =  196 bits (497), Expect(2) = 2e-72
 Identities = 93/174 (53%), Positives = 116/174 (66%)
 Frame = -1

Query: 524  GKTAILVIVDRLSKYTHFSTLTHPYTATSVAEVFVRDIARLHGMPRTIVSDRDPIFLSAF 345
            G   ILV+VDRLSKY HF TL HP+TA +VA VF+++I +LHG P TIVSDRD +F+S F
Sbjct: 1191 GWDTILVVVDRLSKYAHFITLKHPFTAPTVAAVFIKEIVKLHGFPSTIVSDRDKVFMSLF 1250

Query: 344  WEAFFSLQGTQLCRSSVYHPQSDGQTEVTNHTLECYLHCFASQNPHD*TRWLPWPELWYN 165
            W+  F LQGT L RS+ YHPQSDGQTEV N +LE YL CF +  P    +W+ W E WYN
Sbjct: 1251 WKELFKLQGTLLHRSTAYHPQSDGQTEVVNKSLEAYLRCFCNGRPKAWAQWISWAEYWYN 1310

Query: 164  TTYHFAIQMTPFQVVYSRPPLSIFAYLPGSTVVHVVYVALWDCDRTLHLLKAHL 3
            T+ H +   TPF++VY R    +F +  GST +  +   L D D TL  LK HL
Sbjct: 1311 TSTHSSSHFTPFKIVYGRDSPPLFRFEKGSTAIFSLEEQLLDRDATLDELKFHL 1364



 Score =  104 bits (259), Expect(2) = 2e-72
 Identities = 48/98 (48%), Positives = 65/98 (66%)
 Frame = -3

Query: 822  GRIVVVPSSSWCSKLLHEFHATPAGGHSGFLRTYKRLQVNFY*PSMKRDTKTFVIHCDVC 643
            GR+V+  +    + LL E+H++P GGHSG  +TYKRL   +Y   MK+D  TFV +C +C
Sbjct: 1092 GRLVIPKNVPLTTTLLEEYHSSPMGGHSGIFKTYKRLAGEWYWKGMKKDVTTFVQNCQIC 1151

Query: 642  QRNKVEAISPPGLLNPLSIPDDVWIDISVDFIEGLRSS 529
            Q+ K   +SP GLL PL IP  +W DIS+DF+EGL  S
Sbjct: 1152 QQFKTSTLSPAGLLQPLPIPLAIWEDISMDFVEGLPKS 1189