BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029735
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containi...    77   1e-12
ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago t...    60   2e-07
ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containi...    59   4e-07
ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containi...    59   5e-07

>ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 43/91 (47%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
 Frame = -3

Query: 263 ATPLFLNNLKP----SFKPPSKXXXXXXXXXXXXXXXTKHPCLVQLEKCSNMSDLKQIHA 96
           ATPL L++ +P     +  P +                 HPCL+ LEKC+ MS LKQIHA
Sbjct: 2   ATPLSLHHPRPPLPTEYPLPLRNAATTANNNNINSQIQLHPCLLSLEKCTTMSQLKQIHA 61

Query: 95  QMLRTGYFSHVFYASQMIAFCALEDSGSLHY 3
           QMLRT  F   F AS+++AFCAL DSGSL Y
Sbjct: 62  QMLRTCLFVDPFSASKIVAFCALHDSGSLPY 92


>ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355500337|gb|AES81540.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 1024

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 28/52 (53%), Positives = 35/52 (67%)
 Frame = -3

Query: 158 HPCLVQLEKCSNMSDLKQIHAQMLRTGYFSHVFYASQMIAFCALEDSGSLHY 3
           +P L+ +E CS M  LKQI A+M  TG  +H F  S++IAFCAL  SG LHY
Sbjct: 158 NPTLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHY 209


>ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|222873565|gb|EEF10696.1|
           predicted protein [Populus trichocarpa]
          Length = 606

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 25/52 (48%), Positives = 36/52 (69%)
 Frame = -3

Query: 158 HPCLVQLEKCSNMSDLKQIHAQMLRTGYFSHVFYASQMIAFCALEDSGSLHY 3
           HP L+ +E C++M  LKQI A M +T   SH F  S+++AFCAL DSG +++
Sbjct: 51  HPILLAMESCTSMLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINH 102


>ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 26/52 (50%), Positives = 37/52 (71%)
 Frame = -3

Query: 158 HPCLVQLEKCSNMSDLKQIHAQMLRTGYFSHVFYASQMIAFCALEDSGSLHY 3
           +P L+ L+ CS+M  LKQI A +  TG  + +F AS+++AFCAL DSG +HY
Sbjct: 53  NPTLLILQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHY 104


>ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/53 (58%), Positives = 35/53 (66%)
 Frame = -3

Query: 161 KHPCLVQLEKCSNMSDLKQIHAQMLRTGYFSHVFYASQMIAFCALEDSGSLHY 3
           K+P LV LE CSN  DLK IHA MLRT  F  VF AS++IAFC    +  LHY
Sbjct: 17  KNPKLVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHY 69