BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029716
         (286 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301939.1| predicted protein [Populus trichocarpa] gi|2...   114   6e-24
ref|XP_002510616.1| pentatricopeptide repeat-containing protein,...   112   2e-23
ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containi...   107   8e-22
emb|CBI18900.3| unnamed protein product [Vitis vinifera]              107   8e-22
emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]   105   5e-21

>ref|XP_002301939.1| predicted protein [Populus trichocarpa] gi|222843665|gb|EEE81212.1|
           predicted protein [Populus trichocarpa]
          Length = 613

 Score =  114 bits (286), Expect = 6e-24
 Identities = 51/95 (53%), Positives = 72/95 (75%)
 Frame = +1

Query: 1   IGMKPNEVTLISVLPVCADIQALNEGKCVHVYAVKMGFLSETKVINSLISMYGKCGVVDA 180
           +G+KPNEVT+I V+  CA +  L+ GKC+H  AVK G L E KV+NSLI++YGKCG ++A
Sbjct: 134 MGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEA 193

Query: 181 SCRLFEAMELRNIVSWNSMIAVCVQNGFSEAGVSH 285
           +C LFE M ++++VSWNSM+AV V  G +E G+ +
Sbjct: 194 ACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGY 228


>ref|XP_002510616.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551317|gb|EEF52803.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 390

 Score =  112 bits (281), Expect = 2e-23
 Identities = 51/93 (54%), Positives = 72/93 (77%)
 Frame = +1

Query: 7   MKPNEVTLISVLPVCADIQALNEGKCVHVYAVKMGFLSETKVINSLISMYGKCGVVDASC 186
           +KPNEVT IS++  C D  AL  GK VH +AVK+G + E KV+N+LI +YGK G +DA+C
Sbjct: 141 LKPNEVTFISLISACTDAGALGMGKYVHGFAVKLGTILEVKVVNALICLYGKSGCLDAAC 200

Query: 187 RLFEAMELRNIVSWNSMIAVCVQNGFSEAGVSH 285
           R+FE M+++N+VSWNS+IAV VQ GF++ G+ +
Sbjct: 201 RIFEEMQVQNLVSWNSIIAVHVQRGFAQDGLRY 233


>ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  107 bits (268), Expect = 8e-22
 Identities = 49/92 (53%), Positives = 70/92 (76%)
 Frame = +1

Query: 4   GMKPNEVTLISVLPVCADIQALNEGKCVHVYAVKMGFLSETKVINSLISMYGKCGVVDAS 183
           G +PNEVTL+SV+  CAD+ AL+EGK +H   VK+G   + KV+NSLI+MYGK G +DA+
Sbjct: 216 GRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAA 275

Query: 184 CRLFEAMELRNIVSWNSMIAVCVQNGFSEAGV 279
            +LFE M +R++VSWNSM+ +   NG++E G+
Sbjct: 276 SQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGM 307



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 22/80 (27%), Positives = 50/80 (62%)
 Frame = +1

Query: 4   GMKPNEVTLISVLPVCADIQALNEGKCVHVYAVKMGFLSETKVINSLISMYGKCGVVDAS 183
           G+ P++ T++++L  C D     + + +H Y  + GF ++  +  +L+++Y K G ++AS
Sbjct: 317 GINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNAS 376

Query: 184 CRLFEAMELRNIVSWNSMIA 243
             +FE ++ R+ ++W +M+A
Sbjct: 377 EDIFEEIKDRDRIAWTAMLA 396


>emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  107 bits (268), Expect = 8e-22
 Identities = 49/92 (53%), Positives = 70/92 (76%)
 Frame = +1

Query: 4   GMKPNEVTLISVLPVCADIQALNEGKCVHVYAVKMGFLSETKVINSLISMYGKCGVVDAS 183
           G +PNEVTL+SV+  CAD+ AL+EGK +H   VK+G   + KV+NSLI+MYGK G +DA+
Sbjct: 159 GRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAA 218

Query: 184 CRLFEAMELRNIVSWNSMIAVCVQNGFSEAGV 279
            +LFE M +R++VSWNSM+ +   NG++E G+
Sbjct: 219 SQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGM 250



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 22/80 (27%), Positives = 50/80 (62%)
 Frame = +1

Query: 4   GMKPNEVTLISVLPVCADIQALNEGKCVHVYAVKMGFLSETKVINSLISMYGKCGVVDAS 183
           G+ P++ T++++L  C D     + + +H Y  + GF ++  +  +L+++Y K G ++AS
Sbjct: 260 GINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNAS 319

Query: 184 CRLFEAMELRNIVSWNSMIA 243
             +FE ++ R+ ++W +M+A
Sbjct: 320 EDIFEEIKDRDRIAWTAMLA 339


>emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  105 bits (261), Expect = 5e-21
 Identities = 48/92 (52%), Positives = 69/92 (75%)
 Frame = +1

Query: 4   GMKPNEVTLISVLPVCADIQALNEGKCVHVYAVKMGFLSETKVINSLISMYGKCGVVDAS 183
           G +PNEVTL+SV+  CA + AL+EGK +H   VK+G   + KV+NSLI+MYGK G +DA+
Sbjct: 236 GRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAA 295

Query: 184 CRLFEAMELRNIVSWNSMIAVCVQNGFSEAGV 279
            +LFE M +R++VSWNSM+ +   NG++E G+
Sbjct: 296 SQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGM 327



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 22/80 (27%), Positives = 50/80 (62%)
 Frame = +1

Query: 4   GMKPNEVTLISVLPVCADIQALNEGKCVHVYAVKMGFLSETKVINSLISMYGKCGVVDAS 183
           G+ P++ T++++L  C D     + + +H Y  + GF ++  +  +L+++Y K G ++AS
Sbjct: 337 GINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNAS 396

Query: 184 CRLFEAMELRNIVSWNSMIA 243
             +FE ++ R+ ++W +M+A
Sbjct: 397 EDIFEEIKDRDTIAWTAMLA 416