BLASTX nr result

ID: Coptis24_contig00029700 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029700
         (363 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265303.2| PREDICTED: uncharacterized protein LOC100266...   144   1e-32
ref|XP_004158679.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   130   1e-28
ref|XP_004134515.1| PREDICTED: uncharacterized protein LOC101220...   130   1e-28
ref|XP_003534858.1| PREDICTED: uncharacterized protein LOC100797...   119   2e-25
dbj|BAC20744.1| WD-40 repeat protein-like [Oryza sativa Japonica...   117   1e-24

>ref|XP_002265303.2| PREDICTED: uncharacterized protein LOC100266712 [Vitis vinifera]
           gi|297738186|emb|CBI27387.3| unnamed protein product
           [Vitis vinifera]
          Length = 509

 Score =  144 bits (362), Expect = 1e-32
 Identities = 71/128 (55%), Positives = 89/128 (69%), Gaps = 7/128 (5%)
 Frame = -1

Query: 363 LGSETSGGSVYFMKLNELLDLTPTSIF-----EVGSLNCTIWTAECHPDGLHAVIGTNRG 199
           LGSET GGSVY + L   LD     I      EV S NCTIWTA+C+  G  AVIGTN G
Sbjct: 218 LGSETIGGSVYILNLTRPLDFNSIPIIRQRMHEVASFNCTIWTADCNSKGSQAVIGTNVG 277

Query: 198 AAMLNLETGAVSWLCHSKSDVFSLQFNESGNVMLCGFRNGGIVTVDVRQKQQGTMV--SR 25
            A++N+ET   SW+C +KSDV SLQ ++SGNV+LCG RNG +VTVDVR+KQ+G     +R
Sbjct: 278 VALVNMETRVPSWVCRTKSDVLSLQLDQSGNVVLCGLRNGAVVTVDVREKQEGAYARHTR 337

Query: 24  HRIPFSSN 1
           HR+P+ S+
Sbjct: 338 HRVPYPSH 345


>ref|XP_004158679.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
           LOC101230256 [Cucumis sativus]
          Length = 515

 Score =  130 bits (326), Expect = 1e-28
 Identities = 66/125 (52%), Positives = 85/125 (68%), Gaps = 7/125 (5%)
 Frame = -1

Query: 363 LGSETSGGSVYFMKLNELLDLTPT------SIFEVGSLNCTIWTAECHPDGLHAVIGTNR 202
           LGS+ SGGSVY + L E LD   T       I EV S +C+IWTA+C   G  AVIGTN 
Sbjct: 223 LGSDVSGGSVYILNLVEPLDFNRTIPVIRRRIHEVASFDCSIWTADCQSSGGRAVIGTNI 282

Query: 201 GAAMLNLETGAVSWLCHSKSDVFSLQFNESGNVMLCGFRNGGIVTVDVRQKQQ-GTMVSR 25
           GAA +++ TG +SW+ H KSD+F+LQ   S NV+LCG RNG IVT+D R++Q+ G  + R
Sbjct: 283 GAASVDMGTGRISWILHGKSDIFALQLIHSENVVLCGLRNGMIVTIDTRERQEVGKRLLR 342

Query: 24  HRIPF 10
           HRIP+
Sbjct: 343 HRIPY 347


>ref|XP_004134515.1| PREDICTED: uncharacterized protein LOC101220880 [Cucumis sativus]
          Length = 515

 Score =  130 bits (326), Expect = 1e-28
 Identities = 66/125 (52%), Positives = 85/125 (68%), Gaps = 7/125 (5%)
 Frame = -1

Query: 363 LGSETSGGSVYFMKLNELLDLTPT------SIFEVGSLNCTIWTAECHPDGLHAVIGTNR 202
           LGS+ SGGSVY + L E LD   T       I EV S +C+IWTA+C   G  AVIGTN 
Sbjct: 223 LGSDVSGGSVYILNLVEPLDFNRTIPVIRRRIHEVASFDCSIWTADCQSSGGRAVIGTNI 282

Query: 201 GAAMLNLETGAVSWLCHSKSDVFSLQFNESGNVMLCGFRNGGIVTVDVRQKQQ-GTMVSR 25
           GAA +++ TG +SW+ H KSD+F+LQ   S NV+LCG RNG IVT+D R++Q+ G  + R
Sbjct: 283 GAASVDMGTGRISWILHGKSDIFALQLIHSENVVLCGLRNGMIVTIDTRERQEVGKRLLR 342

Query: 24  HRIPF 10
           HRIP+
Sbjct: 343 HRIPY 347


>ref|XP_003534858.1| PREDICTED: uncharacterized protein LOC100797740, partial [Glycine
           max]
          Length = 510

 Score =  119 bits (299), Expect = 2e-25
 Identities = 66/130 (50%), Positives = 89/130 (68%), Gaps = 9/130 (6%)
 Frame = -1

Query: 363 LGSETSGGSVYFMKLNELLDLTP------TSIFEVGSLNCTIWTAECHPDGLHAVIGTNR 202
           LGSETSGG+VY + L E L+L P      + + E+ S   TIWT+E   +   AVIGTN 
Sbjct: 228 LGSETSGGTVYTLDLVEPLNLGPGILNTWSGLEEIASFRGTIWTSEYDYNRHRAVIGTNL 287

Query: 201 GAAMLNLETGAVSWLCHSKSDVFSLQFNESGNVMLCGFRNGGIVTVDVRQKQQ---GTMV 31
           GAA ++LETG +SW  H KSDVF+ Q   SGNV+LCG RNG IVTVD R++++   G ++
Sbjct: 288 GAASVDLETGTMSWFLHCKSDVFAQQIVNSGNVILCGLRNGAIVTVDSRERRESLSGRLI 347

Query: 30  SRHRIPFSSN 1
           + HRIP++S+
Sbjct: 348 T-HRIPYASS 356


>dbj|BAC20744.1| WD-40 repeat protein-like [Oryza sativa Japonica Group]
          Length = 475

 Score =  117 bits (293), Expect = 1e-24
 Identities = 60/117 (51%), Positives = 76/117 (64%), Gaps = 11/117 (9%)
 Frame = -1

Query: 363 LGSETSGGSVYFMKLNELLDLTPTS-----------IFEVGSLNCTIWTAECHPDGLHAV 217
           +GS  SGGS++ M L++ +D+   S           I  V S N TIWTA+C+ DG  AV
Sbjct: 184 IGSGESGGSIHIMDLSDTIDVAMGSMNAYGGNIIGNIIPVASFNRTIWTADCNSDGTQAV 243

Query: 216 IGTNRGAAMLNLETGAVSWLCHSKSDVFSLQFNESGNVMLCGFRNGGIVTVDVRQKQ 46
           IGTN GAA  +LE  A+SW+ H KSD+ S QF +SGNV+LCG RNG I  +DVRQKQ
Sbjct: 244 IGTNSGAAFFDLERRALSWMYHCKSDILSQQFMQSGNVVLCGLRNGSIFPLDVRQKQ 300


Top