BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029689
         (237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004158482.1| PREDICTED: pentatricopeptide repeat-containi...    88   8e-16
ref|XP_004152030.1| PREDICTED: pentatricopeptide repeat-containi...    88   8e-16
ref|XP_002279701.2| PREDICTED: pentatricopeptide repeat-containi...    86   3e-15
emb|CBI20513.3| unnamed protein product [Vitis vinifera]               86   3e-15
ref|XP_002522838.1| pentatricopeptide repeat-containing protein,...    85   7e-15

>ref|XP_004158482.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
           mitochondrial-like [Cucumis sativus]
          Length = 554

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 40/75 (53%), Positives = 57/75 (76%)
 Frame = +3

Query: 12  SFSAVSPILHSIEESCEFDLVHPIYSVIRCHNLKPNDEAFRILIQLFVKMKDFEGAYNML 191
           S   +  ILH+++ESCE++LVH +YS+I  HNLKP+ E  R +I L VKMKDF+GAY+ML
Sbjct: 452 STGVLHSILHALDESCEYNLVHQVYSLICRHNLKPDSEILRGMINLHVKMKDFKGAYDML 511

Query: 192 NDLKEMNMKPTTYMY 236
            + ++MN+ PTT +Y
Sbjct: 512 KEWEKMNVIPTTNLY 526


>ref|XP_004152030.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
            mitochondrial-like [Cucumis sativus]
          Length = 1295

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 40/75 (53%), Positives = 57/75 (76%)
 Frame = +3

Query: 12   SFSAVSPILHSIEESCEFDLVHPIYSVIRCHNLKPNDEAFRILIQLFVKMKDFEGAYNML 191
            S   +  ILH+++ESCE++LVH +YS+I  HNLKP+ E  R +I L VKMKDF+GAY+ML
Sbjct: 883  STGVLHSILHALDESCEYNLVHQVYSLICRHNLKPDSEILRGMINLHVKMKDFKGAYDML 942

Query: 192  NDLKEMNMKPTTYMY 236
             + ++MN+ PTT +Y
Sbjct: 943  KEWEKMNVIPTTNLY 957


>ref|XP_002279701.2| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
           mitochondrial-like [Vitis vinifera]
          Length = 848

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 43/78 (55%), Positives = 56/78 (71%)
 Frame = +3

Query: 3   LALSFSAVSPILHSIEESCEFDLVHPIYSVIRCHNLKPNDEAFRILIQLFVKMKDFEGAY 182
           L LS      IL + EES EF+LVH IYSVI   +L+PN E FRI+I L VKMKDF+GAY
Sbjct: 429 LTLSIEMFHSILRASEESFEFNLVHRIYSVICHQSLEPNCETFRIMINLHVKMKDFDGAY 488

Query: 183 NMLNDLKEMNMKPTTYMY 236
           ++L D+K++N+ PT  +Y
Sbjct: 489 DLLKDMKKINLTPTAGIY 506


>emb|CBI20513.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 43/78 (55%), Positives = 56/78 (71%)
 Frame = +3

Query: 3   LALSFSAVSPILHSIEESCEFDLVHPIYSVIRCHNLKPNDEAFRILIQLFVKMKDFEGAY 182
           L LS      IL + EES EF+LVH IYSVI   +L+PN E FRI+I L VKMKDF+GAY
Sbjct: 199 LTLSIEMFHSILRASEESFEFNLVHRIYSVICHQSLEPNCETFRIMINLHVKMKDFDGAY 258

Query: 183 NMLNDLKEMNMKPTTYMY 236
           ++L D+K++N+ PT  +Y
Sbjct: 259 DLLKDMKKINLTPTAGIY 276


>ref|XP_002522838.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537922|gb|EEF39536.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 867

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 43/78 (55%), Positives = 56/78 (71%)
 Frame = +3

Query: 3   LALSFSAVSPILHSIEESCEFDLVHPIYSVIRCHNLKPNDEAFRILIQLFVKMKDFEGAY 182
           L LS   ++ IL + EES EF+LV  IYS+I  HNL PN+E FR +I+L VKMKDF GA+
Sbjct: 458 LTLSIDVLNSILRACEESFEFNLVQQIYSLICHHNLTPNNETFRSMIKLRVKMKDFCGAH 517

Query: 183 NMLNDLKEMNMKPTTYMY 236
           +ML+DLK+  + PT  MY
Sbjct: 518 DMLDDLKKFKLTPTASMY 535