BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029641
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21137.3| unnamed protein product [Vitis vinifera]               68   9e-10
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...    68   9e-10
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me...    65   7e-09
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...    64   2e-08
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2...    62   4e-08

>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
 Frame = -3

Query: 385 DKCGLVKNLAVTGLVSTNLREPLLDKLLQCGI--LTDGPTTMSFKGKDKFFLNEDWVGV 215
           + CGLVKNLA+TGLVST + +PL+DKL  CG+  L D  T+    GK+K FL+ DWVGV
Sbjct: 581 ENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVD-DTSTKLSGKNKVFLDGDWVGV 638


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
 Frame = -3

Query: 385 DKCGLVKNLAVTGLVSTNLREPLLDKLLQCGI--LTDGPTTMSFKGKDKFFLNEDWVGV 215
           + CGLVKNLA+TGLVST + +PL+DKL  CG+  L D  T+    GK+K FL+ DWVGV
Sbjct: 545 ENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVD-DTSTKLSGKNKVFLDGDWVGV 602


>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
           gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
           subunit beta [Medicago truncatula]
          Length = 1237

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 35/59 (59%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
 Frame = -3

Query: 385 DKCGLVKNLAVTGLVSTNLREPLLDKLLQCGI--LTDGPTTMSFKGKDKFFLNEDWVGV 215
           + CGLVKNLAVTG+VST++ E +L +L  CG+  L D  TT+  K KDK FLN DWVGV
Sbjct: 585 ENCGLVKNLAVTGVVSTDVTESILPQLSDCGMEELVDDTTTVLGK-KDKVFLNGDWVGV 642


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron
           macrophyllum]
          Length = 1019

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
 Frame = -3

Query: 385 DKCGLVKNLAVTGLVSTNLREPLLDKLLQCGI--LTDGPTTMSFKGKDKFFLNEDWVGV 215
           + CGLVKNLA+TGLVSTN+ E  LDKLL  G+  L D  +T+   GK K FL+ +WVGV
Sbjct: 365 ENCGLVKNLAITGLVSTNIEEHFLDKLLDSGMEKLVDDTSTL-LSGKVKVFLDGNWVGV 422


>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
           predicted protein [Populus trichocarpa]
          Length = 1160

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 34/59 (57%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
 Frame = -3

Query: 385 DKCGLVKNLAVTGLVSTNLREPLLDKLLQCGI--LTDGPTTMSFKGKDKFFLNEDWVGV 215
           + CGLVKNLAVTG+VSTN+ E L+DKL   G+  L D  T     GK K FLN +WVGV
Sbjct: 517 ENCGLVKNLAVTGVVSTNISESLVDKLFDSGMEKLVD-DTYTKLDGKHKVFLNGEWVGV 574