BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029636
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...    77   2e-12
ref|XP_003549554.1| PREDICTED: F-box protein CPR30-like [Glycine...    69   3e-10
ref|XP_003529663.1| PREDICTED: F-box protein CPR30-like [Glycine...    68   9e-10
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...    68   9e-10
ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...    67   2e-09

>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
           gi|222854763|gb|EEE92310.1| f-box family protein
           [Populus trichocarpa]
          Length = 396

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 12/127 (9%)
 Frame = +3

Query: 3   NPSTRKRNIIPS-----KSFHGKPSRSVY--GFCSNASVKDYEVVEISLFLKRG----DS 149
           NPSTRK  ++P      K + G  S SVY  GF  ++   DY++V I+ F   G    +S
Sbjct: 119 NPSTRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQFGGGGKRSFES 178

Query: 150 EVTVYSLRRNSWQRIQVFPYAIR-TGRGGVIINGALHWKAHRSRKNGLLQSFESVIIAYD 326
           EV VYSLR+ SW+RI   PY +   G  GV  NGALHW    + ++ +     ++++A D
Sbjct: 179 EVKVYSLRKQSWRRIGDMPYCVHYPGANGVFANGALHWVVGENPESNV----ANIVVALD 234

Query: 327 AGGESFR 347
            G E +R
Sbjct: 235 LGVEDYR 241


>ref|XP_003549554.1| PREDICTED: F-box protein CPR30-like [Glycine max]
          Length = 382

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 10/124 (8%)
 Frame = +3

Query: 3   NPSTRKRNIIPSKSFHGKPSRS-----VYGFCSNASVKDYEVVEISLFL----KRGDSEV 155
           NP  RK  I+PS  FH +P  S     VYGF  +    DY+++ I+ F+    +  DS+V
Sbjct: 110 NPFLRKHRILPSDRFH-RPESSLFAARVYGFGHHPPSNDYKLLSITYFVDLHKRTFDSQV 168

Query: 156 TVYSLRRNSWQRIQVFPYAIRTGRG-GVIINGALHWKAHRSRKNGLLQSFESVIIAYDAG 332
            +Y+L+ +SW+ +   PYA+   R  GV ++G+LHW   R     L      +I+A+D  
Sbjct: 169 QLYTLKSDSWKNLPSMPYALCCARTMGVFVSGSLHWLVTRK----LQPDEPDLIVAFDLT 224

Query: 333 GESF 344
            E+F
Sbjct: 225 SETF 228


>ref|XP_003529663.1| PREDICTED: F-box protein CPR30-like [Glycine max]
          Length = 385

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 11/125 (8%)
 Frame = +3

Query: 3   NPSTRKRNIIPSKSFHGKPSRS-----VYGFCSNASVKDYEVVEISLFL----KRGDSEV 155
           NP  RK  I+P+  FH +P  S     VYGF  ++   DY+++ I+ F+    +  DS+V
Sbjct: 110 NPFLRKHRILPADRFH-RPQSSLFAARVYGFGHHSPSNDYKLLSITYFVDLQKRTFDSQV 168

Query: 156 TVYSLRRNSWQRIQVFPYAIRTGRG-GVIINGALHWKAHRSRKNGLLQSFE-SVIIAYDA 329
            +Y+L+ +SW+ +   PYA+   R  GV ++G+LHW   R      LQ  E  +I+++D 
Sbjct: 169 QLYTLKSDSWKNLPSMPYALCCARTMGVFVSGSLHWLVTRK-----LQPHEPDLIVSFDL 223

Query: 330 GGESF 344
             E+F
Sbjct: 224 TRETF 228


>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 389

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 12/126 (9%)
 Frame = +3

Query: 3   NPSTRKRNIIPS-----KSFHGKPSR--SVYGFCSNASVKDYEVVEISLF----LKRGDS 149
           NPS R   ++P      K + G  S   SV+GF  + S  DY++V I+ F     K  +S
Sbjct: 112 NPSIRAHRVVPYLPVELKRYFGMCSCRVSVFGFGYDLSNDDYKLVRIAQFGGVDRKSFES 171

Query: 150 EVTVYSLRRNSWQRIQVFPYAI-RTGRGGVIINGALHWKAHRSRKNGLLQSFESVIIAYD 326
           EV V+SLR+NSW+RI   PY +   G  G+  NGALHW   +   +    +    I+A D
Sbjct: 172 EVKVFSLRKNSWRRIADMPYCVLYPGENGIYANGALHWLVSQDPDS----TVADTIVALD 227

Query: 327 AGGESF 344
            G E +
Sbjct: 228 LGVEDY 233


>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
           gi|355511583|gb|AES92725.1| F-box family protein
           [Medicago truncatula]
          Length = 392

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
 Frame = +3

Query: 3   NPSTRKRNIIPSKSFHGKPSRS-----------VYGFCSNASVKDYEVVEISLFL----K 137
           NP+ RK  IIPS+    K +             VYGF  +++  DY++V IS F+    +
Sbjct: 109 NPTIRKHRIIPSEPLIRKETNENNTITTLLAAHVYGFGYDSATDDYKLVSISYFVDLHNR 168

Query: 138 RGDSEVTVYSLRRNSWQRIQVFPYAIRTGRG-GVIINGALHWKAHRSRKNGLLQSFESVI 314
             DS V +Y++R + W+ +   PYA+   R  GV ++GALHW   R     L      +I
Sbjct: 169 SFDSHVKIYTMRTDVWKTLPSMPYALCCARTMGVFVSGALHWVVTRD----LEPESRDLI 224

Query: 315 IAYDAGGESFR 347
           +A+D   E FR
Sbjct: 225 VAFDLRFEVFR 235