BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029625
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310252.1| predicted protein [Populus trichocarpa] gi|2...   115   5e-24
ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containi...   106   2e-21
emb|CBI32639.3| unnamed protein product [Vitis vinifera]               97   1e-18
ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18
ref|XP_002521555.1| pentatricopeptide repeat-containing protein,...    96   3e-18

>ref|XP_002310252.1| predicted protein [Populus trichocarpa] gi|222853155|gb|EEE90702.1|
           predicted protein [Populus trichocarpa]
          Length = 540

 Score =  115 bits (287), Expect = 5e-24
 Identities = 56/101 (55%), Positives = 74/101 (73%)
 Frame = -3

Query: 305 MISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMG 126
           ++S  ++ G+   A+ VF+AMR E VE + F LCSVLKACA +K+ + GK+VH LVIVMG
Sbjct: 164 LVSSFLRHGLAKEALGVFRAMRRESVEITEFTLCSVLKACAFIKAFRQGKQVHGLVIVMG 223

Query: 125 CDLLVLSTALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNA 3
            DL+VL TALID YS+ G I E +KVFS LSC+KD  + N+
Sbjct: 224 RDLVVLGTALIDFYSNVGYISEAMKVFSCLSCRKDEVLRNS 264


>ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Cucumis sativus]
           gi|449529896|ref|XP_004171934.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Cucumis sativus]
          Length = 544

 Score =  106 bits (264), Expect = 2e-21
 Identities = 49/101 (48%), Positives = 73/101 (72%)
 Frame = -3

Query: 305 MISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMG 126
           ++S  ++ G+   A+ VF+ M+ E+VEFS F LCSVLKACA ++  + GK+VH +V+VM 
Sbjct: 164 LLSSFLREGLAEEALNVFEEMKREKVEFSEFTLCSVLKACAALEDYRLGKQVHGVVVVMN 223

Query: 125 CDLLVLSTALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNA 3
            D+LVL TAL+D YS  G I E +KV++ L+C+KD+ I N+
Sbjct: 224 RDMLVLGTALVDFYSSVGCISEAVKVYTSLNCRKDDIILNS 264


>emb|CBI32639.3| unnamed protein product [Vitis vinifera]
          Length = 459

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 48/101 (47%), Positives = 71/101 (70%)
 Frame = -3

Query: 305 MISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMG 126
           M+S  V+ G    A+ VF+ M++E V  S F LCS+LKAC ++K+ + GK+VHALV+VMG
Sbjct: 73  MLSSFVRHGRPEEALAVFREMQKEGVWLSEFTLCSLLKACTLLKAFQQGKQVHALVVVMG 132

Query: 125 CDLLVLSTALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNA 3
            DL+VL TALID Y++   I E +++F  L+ KKD+ + N+
Sbjct: 133 RDLVVLGTALIDFYTNVECIGEAMEIFHNLNWKKDDVMRNS 173


>ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 498

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 48/101 (47%), Positives = 71/101 (70%)
 Frame = -3

Query: 305 MISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMG 126
           M+S  V+ G    A+ VF+ M++E V  S F LCS+LKAC ++K+ + GK+VHALV+VMG
Sbjct: 112 MLSSFVRHGRPEEALAVFREMQKEGVWLSEFTLCSLLKACTLLKAFQQGKQVHALVVVMG 171

Query: 125 CDLLVLSTALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNA 3
            DL+VL TALID Y++   I E +++F  L+ KKD+ + N+
Sbjct: 172 RDLVVLGTALIDFYTNVECIGEAMEIFHNLNWKKDDVMRNS 212


>ref|XP_002521555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539233|gb|EEF40826.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 418

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
 Frame = -3

Query: 305 MISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALV-IVM 129
           ++S  ++ G+   A+ +F AMR E VEFS F LCSVLKACA +K+   GK+VH LV +  
Sbjct: 150 LLSSFLRHGLSNKALGIFGAMRREGVEFSEFTLCSVLKACAAVKAFSQGKQVHGLVGLSW 209

Query: 128 GCDLLVLSTALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNA 3
               +VL TALID YS  G +DE LKVFS LS + D+ I N+
Sbjct: 210 AVIWVVLGTALIDFYSTVGYVDEALKVFSSLSWRTDDVICNS 251