BLASTX nr result
ID: Coptis24_contig00029625
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00029625 (307 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002310252.1| predicted protein [Populus trichocarpa] gi|2... 115 5e-24 ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containi... 106 2e-21 emb|CBI32639.3| unnamed protein product [Vitis vinifera] 97 1e-18 ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containi... 97 1e-18 ref|XP_002521555.1| pentatricopeptide repeat-containing protein,... 96 3e-18 >ref|XP_002310252.1| predicted protein [Populus trichocarpa] gi|222853155|gb|EEE90702.1| predicted protein [Populus trichocarpa] Length = 540 Score = 115 bits (287), Expect = 5e-24 Identities = 56/101 (55%), Positives = 74/101 (73%) Frame = -3 Query: 305 MISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMG 126 ++S ++ G+ A+ VF+AMR E VE + F LCSVLKACA +K+ + GK+VH LVIVMG Sbjct: 164 LVSSFLRHGLAKEALGVFRAMRRESVEITEFTLCSVLKACAFIKAFRQGKQVHGLVIVMG 223 Query: 125 CDLLVLSTALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNA 3 DL+VL TALID YS+ G I E +KVFS LSC+KD + N+ Sbjct: 224 RDLVVLGTALIDFYSNVGYISEAMKVFSCLSCRKDEVLRNS 264 >ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like [Cucumis sativus] gi|449529896|ref|XP_004171934.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like [Cucumis sativus] Length = 544 Score = 106 bits (264), Expect = 2e-21 Identities = 49/101 (48%), Positives = 73/101 (72%) Frame = -3 Query: 305 MISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMG 126 ++S ++ G+ A+ VF+ M+ E+VEFS F LCSVLKACA ++ + GK+VH +V+VM Sbjct: 164 LLSSFLREGLAEEALNVFEEMKREKVEFSEFTLCSVLKACAALEDYRLGKQVHGVVVVMN 223 Query: 125 CDLLVLSTALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNA 3 D+LVL TAL+D YS G I E +KV++ L+C+KD+ I N+ Sbjct: 224 RDMLVLGTALVDFYSSVGCISEAVKVYTSLNCRKDDIILNS 264 >emb|CBI32639.3| unnamed protein product [Vitis vinifera] Length = 459 Score = 97.4 bits (241), Expect = 1e-18 Identities = 48/101 (47%), Positives = 71/101 (70%) Frame = -3 Query: 305 MISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMG 126 M+S V+ G A+ VF+ M++E V S F LCS+LKAC ++K+ + GK+VHALV+VMG Sbjct: 73 MLSSFVRHGRPEEALAVFREMQKEGVWLSEFTLCSLLKACTLLKAFQQGKQVHALVVVMG 132 Query: 125 CDLLVLSTALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNA 3 DL+VL TALID Y++ I E +++F L+ KKD+ + N+ Sbjct: 133 RDLVVLGTALIDFYTNVECIGEAMEIFHNLNWKKDDVMRNS 173 >ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like, partial [Vitis vinifera] Length = 498 Score = 97.4 bits (241), Expect = 1e-18 Identities = 48/101 (47%), Positives = 71/101 (70%) Frame = -3 Query: 305 MISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMG 126 M+S V+ G A+ VF+ M++E V S F LCS+LKAC ++K+ + GK+VHALV+VMG Sbjct: 112 MLSSFVRHGRPEEALAVFREMQKEGVWLSEFTLCSLLKACTLLKAFQQGKQVHALVVVMG 171 Query: 125 CDLLVLSTALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNA 3 DL+VL TALID Y++ I E +++F L+ KKD+ + N+ Sbjct: 172 RDLVVLGTALIDFYTNVECIGEAMEIFHNLNWKKDDVMRNS 212 >ref|XP_002521555.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539233|gb|EEF40826.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 418 Score = 95.9 bits (237), Expect = 3e-18 Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 1/102 (0%) Frame = -3 Query: 305 MISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALV-IVM 129 ++S ++ G+ A+ +F AMR E VEFS F LCSVLKACA +K+ GK+VH LV + Sbjct: 150 LLSSFLRHGLSNKALGIFGAMRREGVEFSEFTLCSVLKACAAVKAFSQGKQVHGLVGLSW 209 Query: 128 GCDLLVLSTALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNA 3 +VL TALID YS G +DE LKVFS LS + D+ I N+ Sbjct: 210 AVIWVVLGTALIDFYSTVGYVDEALKVFSSLSWRTDDVICNS 251