BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029609
         (621 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containi...   273   2e-71
ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   224   1e-56
ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containi...   221   6e-56
ref|XP_002318245.1| predicted protein [Populus trichocarpa] gi|2...   221   8e-56
ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [S...   220   1e-55

>ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  273 bits (698), Expect = 2e-71
 Identities = 127/206 (61%), Positives = 160/206 (77%)
 Frame = -3

Query: 619 KLFDEMPERNVESWNVVISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSE 440
           +LF EMPERNV SWN V+ GY K G VD+ R LFD M +RD+ SW +MIS YVQ+ R +E
Sbjct: 213 RLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAE 272

Query: 439 GIELFKEMQNDGIRPDGVILSSVLSACGQIGALDMGRWIYAYAGRNKVKYDVFLGTSLVD 260
            +ELFKEM   G+  D +I++S+LSAC QIGALDMGRWI+AY  R+K++ DVFL T+LVD
Sbjct: 273 ALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVD 332

Query: 259 MYAKCGCIDEALRVFDSMVNKNVCTWNAIICGLAMHGYGGKVLELYKQMESANVAPNDVT 80
           MYAKCGCID A  VF++M  KN+C+WNA++ GLA+HG+G   LEL+KQMES  V PND+T
Sbjct: 333 MYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDIT 392

Query: 79  FVGVLCACCHIGLVDEGRRQFNRMKK 2
           FV VL AC HIG V+EG ++FN+M K
Sbjct: 393 FVAVLSACSHIGSVEEGWKKFNQMDK 418



 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 53/178 (29%), Positives = 86/178 (48%)
 Frame = -3

Query: 541 VDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQNDGIRPDGVILSSVLSA 362
           +D    +F  ++  D +SW+ MI G+V+++   + +E +  M+  G+  +      VL A
Sbjct: 76  IDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKA 135

Query: 361 CGQIGALDMGRWIYAYAGRNKVKYDVFLGTSLVDMYAKCGCIDEALRVFDSMVNKNVCTW 182
            G   +   GR ++    +    YDVF   +L+ MY KCG I +A  +FD M N NV TW
Sbjct: 136 YGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTW 195

Query: 181 NAIICGLAMHGYGGKVLELYKQMESANVAPNDVTFVGVLCACCHIGLVDEGRRQFNRM 8
           N +I G    G   +   L+ +M   NV     ++  V+     +G VD  R  F+ M
Sbjct: 196 NTMITGCFGCGDTERARRLFGEMPERNVG----SWNAVVGGYSKLGHVDIARSLFDLM 249



 Score = 78.6 bits (192), Expect = 9e-13
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 2/144 (1%)
 Frame = -3

Query: 571 VISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQNDGIRPD 392
           ++  Y K G +D    +F+ M +++L SW+AM+SG      G   +ELFK+M++ G+ P+
Sbjct: 330 LVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPN 389

Query: 391 GVILSSVLSACGQIGALDMGRWIYAYAGRN-KVKYDVFLGTSLVDMYAKCGCIDEALRVF 215
            +   +VLSAC  IG+++ G   +    +   +   V     +VD+  + G I+EA  + 
Sbjct: 390 DITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMI 449

Query: 214 DSM-VNKNVCTWNAIICGLAMHGY 146
            +M +  NV  W A++    +HGY
Sbjct: 450 RTMPLEPNVVIWGALLNACKVHGY 473


>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  224 bits (571), Expect = 1e-56
 Identities = 109/205 (53%), Positives = 144/205 (70%)
 Frame = -3

Query: 616 LFDEMPERNVESWNVVISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEG 437
           LFD MPER++ SWN +I G+   G V   + LFDR  +RDL SWS+MI+ Y ++R+ +E 
Sbjct: 193 LFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEA 252

Query: 436 IELFKEMQNDGIRPDGVILSSVLSACGQIGALDMGRWIYAYAGRNKVKYDVFLGTSLVDM 257
           + LF EMQ   + PD V + SVLSACG +GAL MG+ I+    RN+++ D+ LGTSLVDM
Sbjct: 253 LRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDM 312

Query: 256 YAKCGCIDEALRVFDSMVNKNVCTWNAIICGLAMHGYGGKVLELYKQMESANVAPNDVTF 77
           YAKCG ID +LRVF+ M N++V  W+A+I GLA HG+G   L+ + +M S ++ PNDVTF
Sbjct: 313 YAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTF 372

Query: 76  VGVLCACCHIGLVDEGRRQFNRMKK 2
           +GVL AC HIGLVDEG   F  M K
Sbjct: 373 IGVLSACSHIGLVDEGWTYFTSMSK 397



 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 63/231 (27%)
 Frame = -3

Query: 529 RLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQNDGIRP-DGVILSSVLSACGQ 353
           R +FD +   D F W+ MI  Y+ S+   E + LF +M++    P D   LS V+ ACG+
Sbjct: 58  RSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGR 117

Query: 352 IGALDMGRWIYAYAGRNKVKYDVFLGTSLVDMYAKCGCIDEALRV--------------- 218
           +     G+ ++    +  +  D+F+ T+L++MYAK G I+ A  +               
Sbjct: 118 LKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVL 177

Query: 217 ----------------FDSMVNKNVCTWNAIICGLAMHGYGG------------------ 140
                           FD M  +++ +WN +I G A  G  G                  
Sbjct: 178 LAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWS 237

Query: 139 -------------KVLELYKQMESANVAPNDVTFVGVLCACCHIGLVDEGR 26
                        + L L+ +M+ ANV P+ VT V VL AC  +G +  G+
Sbjct: 238 SMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGK 288


>ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  221 bits (564), Expect = 6e-56
 Identities = 103/205 (50%), Positives = 146/205 (71%), Gaps = 1/205 (0%)
 Frame = -3

Query: 619 KLFDEMPERNVESWNVVISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSE 440
           KLFDEM  R+V SWN +ISGYC SG VD  R++FD M +++L SWS MISGY ++ + ++
Sbjct: 183 KLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYAD 242

Query: 439 GIELFKEMQNDG-IRPDGVILSSVLSACGQIGALDMGRWIYAYAGRNKVKYDVFLGTSLV 263
            IELF++MQ++G + P+ V L SVLSAC  +GALD+G+WI+ +  RNK++  +FLG +L 
Sbjct: 243 AIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALA 302

Query: 262 DMYAKCGCIDEALRVFDSMVNKNVCTWNAIICGLAMHGYGGKVLELYKQMESANVAPNDV 83
           DMYAKCGC+ EA  VF  M  ++V +W+ II GLAM+GY  +    + +M    + PND+
Sbjct: 303 DMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDI 362

Query: 82  TFVGVLCACCHIGLVDEGRRQFNRM 8
           +F+G+L AC H GLVD+G   F+ M
Sbjct: 363 SFMGLLTACTHAGLVDKGLEYFDMM 387



 Score = 88.6 bits (218), Expect = 8e-16
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 35/202 (17%)
 Frame = -3

Query: 526 LLFDR-MSKRDLFSWSAMISGYVQSRRGSEGIELFKE--MQNDGIRPDGVILSSVLSACG 356
           L+F+  +S  ++F+++A++  + Q       I  F    +  +   PD    +SVL AC 
Sbjct: 79  LIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACA 138

Query: 355 QIGALDMGRWIYAYAGRNKVKYDVFLGTSLVDMYAKCGC--------------------- 239
            +  +  G+ ++ +  +   + ++F+  SLVD+Y K GC                     
Sbjct: 139 GLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNT 198

Query: 238 ----------IDEALRVFDSMVNKNVCTWNAIICGLAMHGYGGKVLELYKQME-SANVAP 92
                     +D+A  VFD M+ KN+ +W+ +I G A +      +EL++QM+    +AP
Sbjct: 199 LISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAP 258

Query: 91  NDVTFVGVLCACCHIGLVDEGR 26
           NDVT V VL AC H+G +D G+
Sbjct: 259 NDVTLVSVLSACAHLGALDLGK 280


>ref|XP_002318245.1| predicted protein [Populus trichocarpa] gi|222858918|gb|EEE96465.1|
           predicted protein [Populus trichocarpa]
          Length = 513

 Score =  221 bits (563), Expect = 8e-56
 Identities = 97/195 (49%), Positives = 147/195 (75%)
 Frame = -3

Query: 589 VESWNVVISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQN 410
           +E  N ++  Y K G +   + +FD ++++D+ SW+++ISG VQ     E +ELF++MQ+
Sbjct: 167 LEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQS 226

Query: 409 DGIRPDGVILSSVLSACGQIGALDMGRWIYAYAGRNKVKYDVFLGTSLVDMYAKCGCIDE 230
            GI PDG+IL+SVLSAC ++GALD GRW++ +  R  +K+D+ +GT++VDMYAKCGCI+ 
Sbjct: 227 SGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEM 286

Query: 229 ALRVFDSMVNKNVCTWNAIICGLAMHGYGGKVLELYKQMESANVAPNDVTFVGVLCACCH 50
           ++++F+ M +KNV TWNA++ GLAMHG+  KVLEL+++M    + PN+VTF+ +L ACCH
Sbjct: 287 SMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCH 346

Query: 49  IGLVDEGRRQFNRMK 5
            GLV+EGR+ FN MK
Sbjct: 347 CGLVNEGRQYFNWMK 361



 Score =  122 bits (307), Expect = 4e-26
 Identities = 67/188 (35%), Positives = 105/188 (55%)
 Frame = -3

Query: 589 VESWNVVISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQN 410
           VE+  V     CK  F D  R+ FD M  RD+ SW+ +ISGYV++    E + LF  M  
Sbjct: 71  VENSLVHFYSVCKR-FGDASRV-FDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRMD- 127

Query: 409 DGIRPDGVILSSVLSACGQIGALDMGRWIYAYAGRNKVKYDVFLGTSLVDMYAKCGCIDE 230
             + P+     SVL ACG+ G L +G+ I+  + ++     + +  +L+DMY KCGC+  
Sbjct: 128 --VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPG 185

Query: 229 ALRVFDSMVNKNVCTWNAIICGLAMHGYGGKVLELYKQMESANVAPNDVTFVGVLCACCH 50
           A +VFD +  K++ +W +II GL       + LEL++ M+S+ + P+ +    VL AC  
Sbjct: 186 AKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACAR 245

Query: 49  IGLVDEGR 26
           +G +D GR
Sbjct: 246 LGALDYGR 253



 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 44/154 (28%), Positives = 77/154 (50%)
 Frame = -3

Query: 487 WSAMISGYVQSRRGSEGIELFKEMQNDGIRPDGVILSSVLSACGQIGALDMGRWIYAYAG 308
           ++A++SGY    R      +++ +  DG  PD     +VL +C +   +  GR ++    
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 307 RNKVKYDVFLGTSLVDMYAKCGCIDEALRVFDSMVNKNVCTWNAIICGLAMHGYGGKVLE 128
           +     ++++  SLV  Y+ C    +A RVFD M+ ++V +W  +I G    G   + + 
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 127 LYKQMESANVAPNDVTFVGVLCACCHIGLVDEGR 26
           L+ +M+   V PN  TFV VL AC   G +  G+
Sbjct: 122 LFLRMD---VEPNAATFVSVLVACGRKGYLSVGK 152



 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 33/138 (23%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
 Frame = -3

Query: 598 ERNVESWNV-----VISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGI 434
           +R    W++     ++  Y K G +++   +F+ M  +++ +W+A+++G        + +
Sbjct: 260 DRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVL 319

Query: 433 ELFKEMQNDGIRPDGVILSSVLSACGQIGALDMGRWIYAYAGRNKVKYDVFLG--TSLVD 260
           ELF+EM   G+RP+ V   ++L+AC   G ++ GR  + +    +      L     +VD
Sbjct: 320 ELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVD 379

Query: 259 MYAKCGCIDEALRVFDSM 206
           +  +   +DEAL +  +M
Sbjct: 380 LLCRARLLDEALELTKAM 397


>ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
           gi|241927367|gb|EES00512.1| hypothetical protein
           SORBIDRAFT_03g010050 [Sorghum bicolor]
          Length = 506

 Score =  220 bits (561), Expect = 1e-55
 Identities = 99/203 (48%), Positives = 144/203 (70%)
 Frame = -3

Query: 616 LFDEMPERNVESWNVVISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEG 437
           +F EM  R+V +WNV+I+GY K+G +   R LFD M +R++ SW+ +I GY Q RR  E 
Sbjct: 136 VFHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEA 195

Query: 436 IELFKEMQNDGIRPDGVILSSVLSACGQIGALDMGRWIYAYAGRNKVKYDVFLGTSLVDM 257
           +E+F+ MQ +GI PDGV L SVLSACG +GA+D+G W++ +  R  ++ ++ L  S++DM
Sbjct: 196 VEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDM 255

Query: 256 YAKCGCIDEALRVFDSMVNKNVCTWNAIICGLAMHGYGGKVLELYKQMESANVAPNDVTF 77
           Y KCGCI++A+ VF+ M  K+V TW  +I G A+HG G + +E++++ME  N+APNDVTF
Sbjct: 256 YMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTF 315

Query: 76  VGVLCACCHIGLVDEGRRQFNRM 8
           + +L AC H+GL D GR  FN M
Sbjct: 316 LAILSACSHVGLTDLGRWYFNIM 338