BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029572
         (237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containi...   114   6e-24
ref|XP_002319164.1| predicted protein [Populus trichocarpa] gi|2...   110   9e-23
ref|XP_002525440.1| pentatricopeptide repeat-containing protein,...   105   4e-21
gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indi...   103   1e-20
ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group] g...   103   1e-20

>ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  114 bits (286), Expect = 6e-24
 Identities = 56/78 (71%), Positives = 63/78 (80%)
 Frame = +3

Query: 3   RCGRVDEAYLAFGIIHTKDQISWNGLISGFAQSGQCEEALKVFTLMNQRGLAANLFTYCS 182
           RCGR  +AYLAF  I  KD ISWN LISGFAQSG CEEAL+VF+ MNQ G+ ANLFT+ S
Sbjct: 563 RCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGS 622

Query: 183 TVSASANVADIKQGKQIH 236
            VSA+AN A+IKQGKQIH
Sbjct: 623 AVSATANTANIKQGKQIH 640



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 25/74 (33%), Positives = 44/74 (59%)
 Frame = +3

Query: 3   RCGRVDEAYLAFGIIHTKDQISWNGLISGFAQSGQCEEALKVFTLMNQRGLAANLFTYCS 182
           +CG +++A   F  +  K+ +SWN +I+G++Q G   EA+ +F  M Q GL  N  T+  
Sbjct: 664 KCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVG 723

Query: 183 TVSASANVADIKQG 224
            +SA ++V  + +G
Sbjct: 724 VLSACSHVGLVNEG 737


>ref|XP_002319164.1| predicted protein [Populus trichocarpa] gi|222857540|gb|EEE95087.1|
           predicted protein [Populus trichocarpa]
          Length = 989

 Score =  110 bits (276), Expect = 9e-23
 Identities = 54/78 (69%), Positives = 62/78 (79%)
 Frame = +3

Query: 3   RCGRVDEAYLAFGIIHTKDQISWNGLISGFAQSGQCEEALKVFTLMNQRGLAANLFTYCS 182
           RCGR+ EAYL F  I  KD ISWNGLISGFAQSG CE+ALKVF  MN+  L A+ FT+ S
Sbjct: 563 RCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGS 622

Query: 183 TVSASANVADIKQGKQIH 236
            VSA+AN+A+IKQGKQIH
Sbjct: 623 AVSAAANIANIKQGKQIH 640



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 29/76 (38%), Positives = 44/76 (57%)
 Frame = +3

Query: 9   GRVDEAYLAFGIIHTKDQISWNGLISGFAQSGQCEEALKVFTLMNQRGLAANLFTYCSTV 188
           G++D A++    +   D +SW  LISG+AQ     EALK F  M  RG+ ++   + S +
Sbjct: 464 GKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAI 523

Query: 189 SASANVADIKQGKQIH 236
           SA A +  + QG+QIH
Sbjct: 524 SACAGIQALNQGRQIH 539


>ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535253|gb|EEF36930.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 878

 Score =  105 bits (262), Expect = 4e-21
 Identities = 51/78 (65%), Positives = 61/78 (78%)
 Frame = +3

Query: 3   RCGRVDEAYLAFGIIHTKDQISWNGLISGFAQSGQCEEALKVFTLMNQRGLAANLFTYCS 182
           RCGR+ EA LAF  I  KD ISWN L+SGFAQSG CEEALK+F  M +  + A+LFT+ S
Sbjct: 640 RCGRIQEANLAFEKIDAKDSISWNALMSGFAQSGYCEEALKIFAQMTRANIKASLFTFGS 699

Query: 183 TVSASANVADIKQGKQIH 236
            VSA+AN+A+IKQGKQIH
Sbjct: 700 AVSAAANMANIKQGKQIH 717


>gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  103 bits (258), Expect = 1e-20
 Identities = 50/78 (64%), Positives = 63/78 (80%)
 Frame = +3

Query: 3   RCGRVDEAYLAFGIIHTKDQISWNGLISGFAQSGQCEEALKVFTLMNQRGLAANLFTYCS 182
           RCGR+ EA+ +F  I  KD+I+WNGL+SGFAQSG  EEALKVF  M+Q G+  N+FT+ S
Sbjct: 493 RCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVS 552

Query: 183 TVSASANVADIKQGKQIH 236
            +SASAN+A+IKQGKQIH
Sbjct: 553 ALSASANLAEIKQGKQIH 570


>ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
           gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa
           Japonica Group]
          Length = 1175

 Score =  103 bits (258), Expect = 1e-20
 Identities = 50/78 (64%), Positives = 63/78 (80%)
 Frame = +3

Query: 3   RCGRVDEAYLAFGIIHTKDQISWNGLISGFAQSGQCEEALKVFTLMNQRGLAANLFTYCS 182
           RCGR+ EA+ +F  I  KD+I+WNGL+SGFAQSG  EEALKVF  M+Q G+  N+FT+ S
Sbjct: 493 RCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVS 552

Query: 183 TVSASANVADIKQGKQIH 236
            +SASAN+A+IKQGKQIH
Sbjct: 553 ALSASANLAEIKQGKQIH 570



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 29/78 (37%), Positives = 46/78 (58%)
 Frame = +3

Query: 3   RCGRVDEAYLAFGIIHTKDQISWNGLISGFAQSGQCEEALKVFTLMNQRGLAANLFTYCS 182
           RCG    A   F  +  +D +++N LISG AQ G  E AL++F  M   GL+ +  T  S
Sbjct: 190 RCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISS 249

Query: 183 TVSASANVADIKQGKQIH 236
            ++A A++ D+++G Q+H
Sbjct: 250 LLAACASLGDLQKGTQLH 267