BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029550
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi...    73   2e-11
gb|AAK44121.1|AF370306_1 putative retroelement pol polyprotein [...    73   2e-11
emb|CAN74381.1| hypothetical protein VITISV_007944 [Vitis vinifera]    73   3e-11
dbj|BAD43492.1| putative retroelement pol polyprotein [Arabidops...    72   4e-11
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar...    66   3e-09

>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1402

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
 Frame = -1

Query: 468 SSMLKPPVPSYREVVPLLQSHKSRVQSYIIE---------------NPNHSLAFYCQQFN 334
           +SM   P PS  +V+P L  +  R+Q Y+ E               + N S  F      
Sbjct: 187 NSMDALPGPSLEDVIPKLTGYDDRLQGYLEETAVSPHVAFNITTSDDSNASGYFNAYNRG 246

Query: 333 NKRKPKGKQHFNSKGRGFIQAGPQRAIQNNGGTPNSSESINEGDGSLTWQICNKPGHSVL 154
             +  +G+  F+++GRGF Q            + NSS     G  S+  QIC K GH  L
Sbjct: 247 KGKSNRGRNSFSTRGRGFHQ---------QISSTNSSSGSQSGGTSVVCQICGKMGHPAL 297

Query: 153 KCWNCFNQYFMPEDIPKALAAM 88
           KCW+ FN  +  E++P+ALAAM
Sbjct: 298 KCWHRFNNSYQYEELPRALAAM 319


>gb|AAK44121.1|AF370306_1 putative retroelement pol polyprotein [Arabidopsis thaliana]
           gi|17104755|gb|AAL34266.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|51971701|dbj|BAD44515.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|51971723|dbj|BAD44526.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|110741320|dbj|BAF02210.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
          Length = 405

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
 Frame = -1

Query: 468 SSMLKPPVPSYREVVPLLQSHKSRVQSYIIE---------------NPNHSLAFYCQQFN 334
           +SM   P PS  +V+P L  +  R+Q Y+ E               + N S  F      
Sbjct: 197 NSMDALPGPSLEDVIPKLTGYDDRLQGYLEETAVSPHVAFNITTSDDSNASGYFNAYNRG 256

Query: 333 NKRKPKGKQHFNSKGRGFIQAGPQRAIQNNGGTPNSSESINEGDGSLTWQICNKPGHSVL 154
             +  +G+  F+++GRGF Q            + NSS     G  S+  QIC K GH  L
Sbjct: 257 KGKSNRGRNSFSTRGRGFHQ---------QISSTNSSSGSQSGGTSVVCQICGKMGHPAL 307

Query: 153 KCWNCFNQYFMPEDIPKALAAM 88
           KCW+ FN  +  E++P+ALAAM
Sbjct: 308 KCWHRFNNSYQYEELPRALAAM 329


>emb|CAN74381.1| hypothetical protein VITISV_007944 [Vitis vinifera]
          Length = 1884

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 54/168 (32%), Positives = 75/168 (44%), Gaps = 39/168 (23%)
 Frame = -1

Query: 474 FTSSML-KPPVPSYREVVPLLQSHKSRVQSYIIENP---NHSLAFYCQQFNNKRKPKGKQ 307
           F  +ML KPP PSY + V  LQ H+  + +   EN    NH  A++ Q+   + +     
Sbjct: 181 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENKESINHEQAYFTQRGRGRNRGG--- 237

Query: 306 HFNSKGRGFIQAG--------------------PQRAIQNNG-----GTPNSSESIN--- 211
            F S+GRGF  AG                    P+ +  N        T N   S N   
Sbjct: 238 RFLSRGRGFTPAGRFNNNATSDQRQNVYSSTRNPRNSFNNQFPPQQISTRNPRNSFNNQF 297

Query: 210 -------EGDGSLTWQICNKPGHSVLKCWNCFNQYFMPEDIPKALAAM 88
                  + +G+L  QIC+K  HS L CWN F+  +  E+IP+ALAAM
Sbjct: 298 PPQQKLQKSEGTLICQICSKANHSALDCWNRFDYXYQSEEIPQALAAM 345


>dbj|BAD43492.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 207

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 15/136 (11%)
 Frame = -1

Query: 450 PVPSYREVVPLLQSHKSRVQSYIIE---------------NPNHSLAFYCQQFNNKRKPK 316
           P PS  +V+P L  +  R+Q Y+ E               + N S  F        +  +
Sbjct: 5   PGPSLEDVIPKLTGYDDRLQGYLEETAVSPHVAFNITTSDDSNASGYFNAYNRGKGKSNR 64

Query: 315 GKQHFNSKGRGFIQAGPQRAIQNNGGTPNSSESINEGDGSLTWQICNKPGHSVLKCWNCF 136
           G+  F+++GRGF Q            + NSS     G  S+  QIC K GH  LKCW+ F
Sbjct: 65  GRNSFSTRGRGFHQ---------QISSTNSSSGSQSGGTSVVCQICGKMGHPALKCWHRF 115

Query: 135 NQYFMPEDIPKALAAM 88
           N  +  E++P+ALAAM
Sbjct: 116 NNSYQYEELPRALAAM 131


>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
          Length = 1522

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 47/135 (34%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
 Frame = -1

Query: 450 PVPSYREVVPLLQSHKSRVQSYIIE---------NPNHSLAFYCQQFNNKRKPK-----G 313
           P  S  EV   L+ +  R+QSY+ E         N  HS + Y    NN+ K +     G
Sbjct: 192 PSLSLDEVASKLRGYDDRLQSYVTEPTISPHVAFNVTHSDSGYYHN-NNRGKGRSNSGSG 250

Query: 312 KQHFNSKGRGFIQAGPQRAIQNNGGTPNSSESINEGDGSLTWQICNKPGHSVLKCWNCFN 133
           K  F+++GRGF Q      I    G+         G+  L  QIC K GH  LKCW+ F+
Sbjct: 251 KSSFSTRGRGFHQQ-----ISPTSGS-------QAGNSGLVCQICGKAGHHALKCWHRFD 298

Query: 132 QYFMPEDIPKALAAM 88
             +  ED+P ALA M
Sbjct: 299 NSYQHEDLPMALATM 313