BLASTX nr result

ID: Coptis24_contig00029528 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029528
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containi...   142   2e-32
ref|XP_002525572.1| pentatricopeptide repeat-containing protein,...   140   1e-31
ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containi...   134   6e-30
gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|...   127   1e-27
ref|NP_179518.1| pentatricopeptide repeat-containing protein [Ar...   127   1e-27

>ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g19280-like [Cucumis sativus]
           gi|449503522|ref|XP_004162044.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g19280-like [Cucumis sativus]
          Length = 532

 Score =  142 bits (359), Expect = 2e-32
 Identities = 68/97 (70%), Positives = 79/97 (81%)
 Frame = +3

Query: 6   FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185
           FEEAFL+W HM+E+ + PDVVTCSALL GYC   RMDEANALFCKMLD GL+PDL+LYNT
Sbjct: 400 FEEAFLLWYHMAENCVTPDVVTCSALLSGYCREKRMDEANALFCKMLDIGLKPDLILYNT 459

Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           LI+GFCS GN+    +LV  M E  IIPNNVT++ALV
Sbjct: 460 LIHGFCSVGNVDEGCNLVKKMIESSIIPNNVTHRALV 496



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
 Frame = +3

Query: 48  GMRPDVVTCSALLHGYCLSHRMDEANAL--------FCKMLDAGLEPDLVLYNTLINGFC 203
           G +PDVV  + +++  C    + EA AL        F KM+  GL+PD+V+YN L++ + 
Sbjct: 266 GSKPDVVDYTTVINSLCKVSLLKEATALDVEMAEVMFEKMIVEGLKPDVVVYNILMDAYG 325

Query: 204 SQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
            +G +  A+ L++MM    + P+ VTY  L+
Sbjct: 326 KKGYMHKAFKLLDMMRSTNVTPDVVTYNTLI 356



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 33/96 (34%), Positives = 51/96 (53%)
 Frame = +3

Query: 9   EEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTL 188
           E A +++  M   G++PDVV  + L+  Y     M +A  L   M    + PD+V YNTL
Sbjct: 296 EMAEVMFEKMIVEGLKPDVVVYNILMDAYGKKGYMHKAFKLLDMMRSTNVTPDVVTYNTL 355

Query: 189 INGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           ING   +G LQ A  +++ +  RG   + VTY  ++
Sbjct: 356 INGLVMRGFLQEAKDILDELIRRGFSVDVVTYTNII 391



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 30/95 (31%), Positives = 53/95 (55%)
 Frame = +3

Query: 12  EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191
           +AF +   M    + PDVVT + L++G  +   + EA  +  +++  G   D+V Y  +I
Sbjct: 332 KAFKLLDMMRSTNVTPDVVTYNTLINGLVMRGFLQEAKDILDELIRRGFSVDVVTYTNII 391

Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           +G+ ++GN + A+ L   MAE  + P+ VT  AL+
Sbjct: 392 HGYSTRGNFEEAFLLWYHMAENCVTPDVVTCSALL 426


>ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535151|gb|EEF36831.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 687

 Score =  140 bits (352), Expect = 1e-31
 Identities = 66/95 (69%), Positives = 79/95 (83%)
 Frame = +3

Query: 6   FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185
           FEEAFLVWS+MSE  ++PDVVTCSALL+GYC + RMDEANALF KMLDAGL+PDLVLYN 
Sbjct: 547 FEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNN 606

Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKA 290
           LI+GFCS GN+  A +LV MM + G +PN  T++A
Sbjct: 607 LIHGFCSAGNMNAACNLVAMMIDDGFLPNITTHRA 641



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 37/95 (38%), Positives = 56/95 (58%)
 Frame = +3

Query: 12  EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191
           +AF     M + G+ P V T + L++  C S  M  A  L  +M+  GL PD+V +N LI
Sbjct: 409 KAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLI 468

Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           +GF  +G LQ A+ L+++M   G+ P+ VTY AL+
Sbjct: 469 DGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALI 503



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 31/95 (32%), Positives = 50/95 (52%)
 Frame = +3

Query: 12  EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191
           EA   +  MSE G+ PD    + ++ GYC    +++A     +ML  G+ P +  Y  LI
Sbjct: 374 EASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLI 433

Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           N  C  G++  A +L+  M   G+IP+ VT+  L+
Sbjct: 434 NACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLI 468



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/96 (33%), Positives = 56/96 (58%)
 Frame = +3

Query: 9   EEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTL 188
           ++AF +   M   GM PD VT +AL+H        +EA  +  +++  GL PD++ +  +
Sbjct: 478 QKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDV 537

Query: 189 INGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           I+GF  +GN + A+ + + M+ER + P+ VT  AL+
Sbjct: 538 IDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALL 573


>ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  134 bits (338), Expect = 6e-30
 Identities = 64/97 (65%), Positives = 80/97 (82%)
 Frame = +3

Query: 6   FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185
           FEEAFL++ +MSEH + PDVVTCSALL+GYC +  M EAN LF KMLDAGL+ D++LYN+
Sbjct: 514 FEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNS 573

Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           LI+GFCS GN+  A HLV+MM E GI+PNN+T+ ALV
Sbjct: 574 LIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALV 610



 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 37/87 (42%), Positives = 55/87 (63%)
 Frame = +3

Query: 36  MSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLINGFCSQGN 215
           M + G+RP V T + L+   C    M+ A  LF +M+  GL PD+V YNTL+NG+  +G+
Sbjct: 384 MLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGH 443

Query: 216 LQCAYHLVNMMAERGIIPNNVTYKALV 296
           LQ A+ L++MM   G+ P+ VTY  L+
Sbjct: 444 LQKAFELLSMMRSAGVSPDLVTYNILI 470



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 30/95 (31%), Positives = 49/95 (51%)
 Frame = +3

Query: 12  EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191
           +A  V+  M E G+ PD  + + ++ GYC    +  A     KML  G+ P +  Y  LI
Sbjct: 341 KAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLI 400

Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           +  C  GN++ A +L   M   G++P+ V+Y  L+
Sbjct: 401 DSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLM 435



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/96 (33%), Positives = 53/96 (55%)
 Frame = +3

Query: 9   EEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTL 188
           E A  ++  M   G+ PDVV+ + L++GY     + +A  L   M  AG+ PDLV YN L
Sbjct: 410 EMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNIL 469

Query: 189 INGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           I+G   +G +  A  +++ +  RG  P+ VT+  ++
Sbjct: 470 IHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNII 505



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/96 (33%), Positives = 55/96 (57%)
 Frame = +3

Query: 9   EEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTL 188
           ++AF + S M   G+ PD+VT + L+HG      ++EA  +  ++   G  PD+V +  +
Sbjct: 445 QKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNI 504

Query: 189 INGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           I GF ++GN + A+ L   M+E  + P+ VT  AL+
Sbjct: 505 IGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALL 540


>gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|BAD94048.1|
           putative salt-inducible protein [Arabidopsis thaliana]
           gi|110738808|dbj|BAF01327.1| putative salt-inducible
           protein [Arabidopsis thaliana]
          Length = 693

 Score =  127 bits (318), Expect = 1e-27
 Identities = 56/97 (57%), Positives = 80/97 (82%)
 Frame = +3

Query: 6   FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185
           F+EAF++W +M++  M+PDVVTCSALLHGYC + RM++A  LF K+LDAGL+PD+VLYNT
Sbjct: 564 FQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNT 623

Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           LI+G+CS G+++ A  L+ +M +RG++PN  T+ ALV
Sbjct: 624 LIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 28/95 (29%), Positives = 56/95 (58%)
 Frame = +3

Query: 12  EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191
           +A  V+ +M   G++ DVVT + L+HGY  +H++++   L  +M  AG+ PD+  YN LI
Sbjct: 461 DAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILI 520

Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           +    +G +  A  +++ +  RG +P+ + +  ++
Sbjct: 521 HSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVI 555


>ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|334184304|ref|NP_001189552.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g19280 gi|3135258|gb|AAC16458.1| putative
           salt-inducible protein [Arabidopsis thaliana]
           gi|330251769|gb|AEC06863.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|330251770|gb|AEC06864.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 693

 Score =  127 bits (318), Expect = 1e-27
 Identities = 56/97 (57%), Positives = 80/97 (82%)
 Frame = +3

Query: 6   FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185
           F+EAF++W +M++  M+PDVVTCSALLHGYC + RM++A  LF K+LDAGL+PD+VLYNT
Sbjct: 564 FQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNT 623

Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           LI+G+CS G+++ A  L+ +M +RG++PN  T+ ALV
Sbjct: 624 LIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 28/95 (29%), Positives = 56/95 (58%)
 Frame = +3

Query: 12  EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191
           +A  V+ +M   G++ DVVT + L+HGY  +H++++   L  +M  AG+ PD+  YN LI
Sbjct: 461 DAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILI 520

Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
           +    +G +  A  +++ +  RG +P+ + +  ++
Sbjct: 521 HSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVI 555


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