BLASTX nr result
ID: Coptis24_contig00029528
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00029528 (301 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containi... 142 2e-32 ref|XP_002525572.1| pentatricopeptide repeat-containing protein,... 140 1e-31 ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containi... 134 6e-30 gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|... 127 1e-27 ref|NP_179518.1| pentatricopeptide repeat-containing protein [Ar... 127 1e-27 >ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280-like [Cucumis sativus] gi|449503522|ref|XP_004162044.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280-like [Cucumis sativus] Length = 532 Score = 142 bits (359), Expect = 2e-32 Identities = 68/97 (70%), Positives = 79/97 (81%) Frame = +3 Query: 6 FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185 FEEAFL+W HM+E+ + PDVVTCSALL GYC RMDEANALFCKMLD GL+PDL+LYNT Sbjct: 400 FEEAFLLWYHMAENCVTPDVVTCSALLSGYCREKRMDEANALFCKMLDIGLKPDLILYNT 459 Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 LI+GFCS GN+ +LV M E IIPNNVT++ALV Sbjct: 460 LIHGFCSVGNVDEGCNLVKKMIESSIIPNNVTHRALV 496 Score = 59.3 bits (142), Expect = 3e-07 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 8/91 (8%) Frame = +3 Query: 48 GMRPDVVTCSALLHGYCLSHRMDEANAL--------FCKMLDAGLEPDLVLYNTLINGFC 203 G +PDVV + +++ C + EA AL F KM+ GL+PD+V+YN L++ + Sbjct: 266 GSKPDVVDYTTVINSLCKVSLLKEATALDVEMAEVMFEKMIVEGLKPDVVVYNILMDAYG 325 Query: 204 SQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 +G + A+ L++MM + P+ VTY L+ Sbjct: 326 KKGYMHKAFKLLDMMRSTNVTPDVVTYNTLI 356 Score = 57.0 bits (136), Expect = 2e-06 Identities = 33/96 (34%), Positives = 51/96 (53%) Frame = +3 Query: 9 EEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTL 188 E A +++ M G++PDVV + L+ Y M +A L M + PD+V YNTL Sbjct: 296 EMAEVMFEKMIVEGLKPDVVVYNILMDAYGKKGYMHKAFKLLDMMRSTNVTPDVVTYNTL 355 Query: 189 INGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 ING +G LQ A +++ + RG + VTY ++ Sbjct: 356 INGLVMRGFLQEAKDILDELIRRGFSVDVVTYTNII 391 Score = 55.8 bits (133), Expect = 3e-06 Identities = 30/95 (31%), Positives = 53/95 (55%) Frame = +3 Query: 12 EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191 +AF + M + PDVVT + L++G + + EA + +++ G D+V Y +I Sbjct: 332 KAFKLLDMMRSTNVTPDVVTYNTLINGLVMRGFLQEAKDILDELIRRGFSVDVVTYTNII 391 Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 +G+ ++GN + A+ L MAE + P+ VT AL+ Sbjct: 392 HGYSTRGNFEEAFLLWYHMAENCVTPDVVTCSALL 426 >ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 687 Score = 140 bits (352), Expect = 1e-31 Identities = 66/95 (69%), Positives = 79/95 (83%) Frame = +3 Query: 6 FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185 FEEAFLVWS+MSE ++PDVVTCSALL+GYC + RMDEANALF KMLDAGL+PDLVLYN Sbjct: 547 FEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNN 606 Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKA 290 LI+GFCS GN+ A +LV MM + G +PN T++A Sbjct: 607 LIHGFCSAGNMNAACNLVAMMIDDGFLPNITTHRA 641 Score = 68.9 bits (167), Expect = 4e-10 Identities = 37/95 (38%), Positives = 56/95 (58%) Frame = +3 Query: 12 EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191 +AF M + G+ P V T + L++ C S M A L +M+ GL PD+V +N LI Sbjct: 409 KAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLI 468 Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 +GF +G LQ A+ L+++M G+ P+ VTY AL+ Sbjct: 469 DGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALI 503 Score = 61.6 bits (148), Expect = 6e-08 Identities = 31/95 (32%), Positives = 50/95 (52%) Frame = +3 Query: 12 EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191 EA + MSE G+ PD + ++ GYC +++A +ML G+ P + Y LI Sbjct: 374 EASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLI 433 Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 N C G++ A +L+ M G+IP+ VT+ L+ Sbjct: 434 NACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLI 468 Score = 61.2 bits (147), Expect = 8e-08 Identities = 32/96 (33%), Positives = 56/96 (58%) Frame = +3 Query: 9 EEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTL 188 ++AF + M GM PD VT +AL+H +EA + +++ GL PD++ + + Sbjct: 478 QKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDV 537 Query: 189 INGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 I+GF +GN + A+ + + M+ER + P+ VT AL+ Sbjct: 538 IDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALL 573 >ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280 [Vitis vinifera] Length = 644 Score = 134 bits (338), Expect = 6e-30 Identities = 64/97 (65%), Positives = 80/97 (82%) Frame = +3 Query: 6 FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185 FEEAFL++ +MSEH + PDVVTCSALL+GYC + M EAN LF KMLDAGL+ D++LYN+ Sbjct: 514 FEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNS 573 Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 LI+GFCS GN+ A HLV+MM E GI+PNN+T+ ALV Sbjct: 574 LIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALV 610 Score = 76.3 bits (186), Expect = 2e-12 Identities = 37/87 (42%), Positives = 55/87 (63%) Frame = +3 Query: 36 MSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLINGFCSQGN 215 M + G+RP V T + L+ C M+ A LF +M+ GL PD+V YNTL+NG+ +G+ Sbjct: 384 MLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGH 443 Query: 216 LQCAYHLVNMMAERGIIPNNVTYKALV 296 LQ A+ L++MM G+ P+ VTY L+ Sbjct: 444 LQKAFELLSMMRSAGVSPDLVTYNILI 470 Score = 61.2 bits (147), Expect = 8e-08 Identities = 30/95 (31%), Positives = 49/95 (51%) Frame = +3 Query: 12 EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191 +A V+ M E G+ PD + + ++ GYC + A KML G+ P + Y LI Sbjct: 341 KAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLI 400 Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 + C GN++ A +L M G++P+ V+Y L+ Sbjct: 401 DSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLM 435 Score = 60.5 bits (145), Expect = 1e-07 Identities = 32/96 (33%), Positives = 53/96 (55%) Frame = +3 Query: 9 EEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTL 188 E A ++ M G+ PDVV+ + L++GY + +A L M AG+ PDLV YN L Sbjct: 410 EMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNIL 469 Query: 189 INGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 I+G +G + A +++ + RG P+ VT+ ++ Sbjct: 470 IHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNII 505 Score = 60.5 bits (145), Expect = 1e-07 Identities = 32/96 (33%), Positives = 55/96 (57%) Frame = +3 Query: 9 EEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTL 188 ++AF + S M G+ PD+VT + L+HG ++EA + ++ G PD+V + + Sbjct: 445 QKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNI 504 Query: 189 INGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 I GF ++GN + A+ L M+E + P+ VT AL+ Sbjct: 505 IGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALL 540 >gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|BAD94048.1| putative salt-inducible protein [Arabidopsis thaliana] gi|110738808|dbj|BAF01327.1| putative salt-inducible protein [Arabidopsis thaliana] Length = 693 Score = 127 bits (318), Expect = 1e-27 Identities = 56/97 (57%), Positives = 80/97 (82%) Frame = +3 Query: 6 FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185 F+EAF++W +M++ M+PDVVTCSALLHGYC + RM++A LF K+LDAGL+PD+VLYNT Sbjct: 564 FQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNT 623 Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 LI+G+CS G+++ A L+ +M +RG++PN T+ ALV Sbjct: 624 LIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660 Score = 62.4 bits (150), Expect = 4e-08 Identities = 28/95 (29%), Positives = 56/95 (58%) Frame = +3 Query: 12 EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191 +A V+ +M G++ DVVT + L+HGY +H++++ L +M AG+ PD+ YN LI Sbjct: 461 DAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILI 520 Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 + +G + A +++ + RG +P+ + + ++ Sbjct: 521 HSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVI 555 >ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|334184304|ref|NP_001189552.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g19280 gi|3135258|gb|AAC16458.1| putative salt-inducible protein [Arabidopsis thaliana] gi|330251769|gb|AEC06863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|330251770|gb|AEC06864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 693 Score = 127 bits (318), Expect = 1e-27 Identities = 56/97 (57%), Positives = 80/97 (82%) Frame = +3 Query: 6 FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185 F+EAF++W +M++ M+PDVVTCSALLHGYC + RM++A LF K+LDAGL+PD+VLYNT Sbjct: 564 FQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNT 623 Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 LI+G+CS G+++ A L+ +M +RG++PN T+ ALV Sbjct: 624 LIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660 Score = 62.4 bits (150), Expect = 4e-08 Identities = 28/95 (29%), Positives = 56/95 (58%) Frame = +3 Query: 12 EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191 +A V+ +M G++ DVVT + L+HGY +H++++ L +M AG+ PD+ YN LI Sbjct: 461 DAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILI 520 Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296 + +G + A +++ + RG +P+ + + ++ Sbjct: 521 HSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVI 555