BLASTX nr result
ID: Coptis24_contig00029528
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00029528
(301 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containi... 142 2e-32
ref|XP_002525572.1| pentatricopeptide repeat-containing protein,... 140 1e-31
ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containi... 134 6e-30
gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|... 127 1e-27
ref|NP_179518.1| pentatricopeptide repeat-containing protein [Ar... 127 1e-27
>ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
gi|449503522|ref|XP_004162044.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
Length = 532
Score = 142 bits (359), Expect = 2e-32
Identities = 68/97 (70%), Positives = 79/97 (81%)
Frame = +3
Query: 6 FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185
FEEAFL+W HM+E+ + PDVVTCSALL GYC RMDEANALFCKMLD GL+PDL+LYNT
Sbjct: 400 FEEAFLLWYHMAENCVTPDVVTCSALLSGYCREKRMDEANALFCKMLDIGLKPDLILYNT 459
Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
LI+GFCS GN+ +LV M E IIPNNVT++ALV
Sbjct: 460 LIHGFCSVGNVDEGCNLVKKMIESSIIPNNVTHRALV 496
Score = 59.3 bits (142), Expect = 3e-07
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Frame = +3
Query: 48 GMRPDVVTCSALLHGYCLSHRMDEANAL--------FCKMLDAGLEPDLVLYNTLINGFC 203
G +PDVV + +++ C + EA AL F KM+ GL+PD+V+YN L++ +
Sbjct: 266 GSKPDVVDYTTVINSLCKVSLLKEATALDVEMAEVMFEKMIVEGLKPDVVVYNILMDAYG 325
Query: 204 SQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
+G + A+ L++MM + P+ VTY L+
Sbjct: 326 KKGYMHKAFKLLDMMRSTNVTPDVVTYNTLI 356
Score = 57.0 bits (136), Expect = 2e-06
Identities = 33/96 (34%), Positives = 51/96 (53%)
Frame = +3
Query: 9 EEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTL 188
E A +++ M G++PDVV + L+ Y M +A L M + PD+V YNTL
Sbjct: 296 EMAEVMFEKMIVEGLKPDVVVYNILMDAYGKKGYMHKAFKLLDMMRSTNVTPDVVTYNTL 355
Query: 189 INGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
ING +G LQ A +++ + RG + VTY ++
Sbjct: 356 INGLVMRGFLQEAKDILDELIRRGFSVDVVTYTNII 391
Score = 55.8 bits (133), Expect = 3e-06
Identities = 30/95 (31%), Positives = 53/95 (55%)
Frame = +3
Query: 12 EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191
+AF + M + PDVVT + L++G + + EA + +++ G D+V Y +I
Sbjct: 332 KAFKLLDMMRSTNVTPDVVTYNTLINGLVMRGFLQEAKDILDELIRRGFSVDVVTYTNII 391
Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
+G+ ++GN + A+ L MAE + P+ VT AL+
Sbjct: 392 HGYSTRGNFEEAFLLWYHMAENCVTPDVVTCSALL 426
>ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223535151|gb|EEF36831.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 687
Score = 140 bits (352), Expect = 1e-31
Identities = 66/95 (69%), Positives = 79/95 (83%)
Frame = +3
Query: 6 FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185
FEEAFLVWS+MSE ++PDVVTCSALL+GYC + RMDEANALF KMLDAGL+PDLVLYN
Sbjct: 547 FEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNN 606
Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKA 290
LI+GFCS GN+ A +LV MM + G +PN T++A
Sbjct: 607 LIHGFCSAGNMNAACNLVAMMIDDGFLPNITTHRA 641
Score = 68.9 bits (167), Expect = 4e-10
Identities = 37/95 (38%), Positives = 56/95 (58%)
Frame = +3
Query: 12 EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191
+AF M + G+ P V T + L++ C S M A L +M+ GL PD+V +N LI
Sbjct: 409 KAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLI 468
Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
+GF +G LQ A+ L+++M G+ P+ VTY AL+
Sbjct: 469 DGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALI 503
Score = 61.6 bits (148), Expect = 6e-08
Identities = 31/95 (32%), Positives = 50/95 (52%)
Frame = +3
Query: 12 EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191
EA + MSE G+ PD + ++ GYC +++A +ML G+ P + Y LI
Sbjct: 374 EASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLI 433
Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
N C G++ A +L+ M G+IP+ VT+ L+
Sbjct: 434 NACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLI 468
Score = 61.2 bits (147), Expect = 8e-08
Identities = 32/96 (33%), Positives = 56/96 (58%)
Frame = +3
Query: 9 EEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTL 188
++AF + M GM PD VT +AL+H +EA + +++ GL PD++ + +
Sbjct: 478 QKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDV 537
Query: 189 INGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
I+GF +GN + A+ + + M+ER + P+ VT AL+
Sbjct: 538 IDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALL 573
>ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
[Vitis vinifera]
Length = 644
Score = 134 bits (338), Expect = 6e-30
Identities = 64/97 (65%), Positives = 80/97 (82%)
Frame = +3
Query: 6 FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185
FEEAFL++ +MSEH + PDVVTCSALL+GYC + M EAN LF KMLDAGL+ D++LYN+
Sbjct: 514 FEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNS 573
Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
LI+GFCS GN+ A HLV+MM E GI+PNN+T+ ALV
Sbjct: 574 LIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALV 610
Score = 76.3 bits (186), Expect = 2e-12
Identities = 37/87 (42%), Positives = 55/87 (63%)
Frame = +3
Query: 36 MSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLINGFCSQGN 215
M + G+RP V T + L+ C M+ A LF +M+ GL PD+V YNTL+NG+ +G+
Sbjct: 384 MLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGH 443
Query: 216 LQCAYHLVNMMAERGIIPNNVTYKALV 296
LQ A+ L++MM G+ P+ VTY L+
Sbjct: 444 LQKAFELLSMMRSAGVSPDLVTYNILI 470
Score = 61.2 bits (147), Expect = 8e-08
Identities = 30/95 (31%), Positives = 49/95 (51%)
Frame = +3
Query: 12 EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191
+A V+ M E G+ PD + + ++ GYC + A KML G+ P + Y LI
Sbjct: 341 KAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLI 400
Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
+ C GN++ A +L M G++P+ V+Y L+
Sbjct: 401 DSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLM 435
Score = 60.5 bits (145), Expect = 1e-07
Identities = 32/96 (33%), Positives = 53/96 (55%)
Frame = +3
Query: 9 EEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTL 188
E A ++ M G+ PDVV+ + L++GY + +A L M AG+ PDLV YN L
Sbjct: 410 EMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNIL 469
Query: 189 INGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
I+G +G + A +++ + RG P+ VT+ ++
Sbjct: 470 IHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNII 505
Score = 60.5 bits (145), Expect = 1e-07
Identities = 32/96 (33%), Positives = 55/96 (57%)
Frame = +3
Query: 9 EEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTL 188
++AF + S M G+ PD+VT + L+HG ++EA + ++ G PD+V + +
Sbjct: 445 QKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNI 504
Query: 189 INGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
I GF ++GN + A+ L M+E + P+ VT AL+
Sbjct: 505 IGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALL 540
>gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|BAD94048.1|
putative salt-inducible protein [Arabidopsis thaliana]
gi|110738808|dbj|BAF01327.1| putative salt-inducible
protein [Arabidopsis thaliana]
Length = 693
Score = 127 bits (318), Expect = 1e-27
Identities = 56/97 (57%), Positives = 80/97 (82%)
Frame = +3
Query: 6 FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185
F+EAF++W +M++ M+PDVVTCSALLHGYC + RM++A LF K+LDAGL+PD+VLYNT
Sbjct: 564 FQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNT 623
Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
LI+G+CS G+++ A L+ +M +RG++PN T+ ALV
Sbjct: 624 LIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660
Score = 62.4 bits (150), Expect = 4e-08
Identities = 28/95 (29%), Positives = 56/95 (58%)
Frame = +3
Query: 12 EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191
+A V+ +M G++ DVVT + L+HGY +H++++ L +M AG+ PD+ YN LI
Sbjct: 461 DAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILI 520
Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
+ +G + A +++ + RG +P+ + + ++
Sbjct: 521 HSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVI 555
>ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334184304|ref|NP_001189552.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g19280 gi|3135258|gb|AAC16458.1| putative
salt-inducible protein [Arabidopsis thaliana]
gi|330251769|gb|AEC06863.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
gi|330251770|gb|AEC06864.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 693
Score = 127 bits (318), Expect = 1e-27
Identities = 56/97 (57%), Positives = 80/97 (82%)
Frame = +3
Query: 6 FEEAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNT 185
F+EAF++W +M++ M+PDVVTCSALLHGYC + RM++A LF K+LDAGL+PD+VLYNT
Sbjct: 564 FQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNT 623
Query: 186 LINGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
LI+G+CS G+++ A L+ +M +RG++PN T+ ALV
Sbjct: 624 LIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660
Score = 62.4 bits (150), Expect = 4e-08
Identities = 28/95 (29%), Positives = 56/95 (58%)
Frame = +3
Query: 12 EAFLVWSHMSEHGMRPDVVTCSALLHGYCLSHRMDEANALFCKMLDAGLEPDLVLYNTLI 191
+A V+ +M G++ DVVT + L+HGY +H++++ L +M AG+ PD+ YN LI
Sbjct: 461 DAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILI 520
Query: 192 NGFCSQGNLQCAYHLVNMMAERGIIPNNVTYKALV 296
+ +G + A +++ + RG +P+ + + ++
Sbjct: 521 HSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVI 555