BLASTX nr result

ID: Coptis24_contig00029345 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029345
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65660.1| hypothetical protein VITISV_000955 [Vitis vinifera]    78   8e-13
ref|XP_002270125.1| PREDICTED: uncharacterized protein LOC100246...    75   7e-12
emb|CBI34670.3| unnamed protein product [Vitis vinifera]               71   8e-11
ref|XP_002509805.1| conserved hypothetical protein [Ricinus comm...    60   2e-07
ref|XP_002299532.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06

>emb|CAN65660.1| hypothetical protein VITISV_000955 [Vitis vinifera]
          Length = 937

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
 Frame = -3

Query: 426 DKTCPLVDKRRSTLLSLNEDSPPSDVSKCRHPTDCNDLSFRFPXXXXXXXXXXXXXXXSF 247
           D+  P+++++RS + SLN D   S V K      C+ + F  P                F
Sbjct: 311 DEEDPVLEEKRSPVKSLNSDLNASSVRK-----PCSQV-FSLPSSPGHFLTRGGSSDGFF 364

Query: 246 NVSKDLKDRKDCTS----------GKFTCNQTISPLDDGNGLLESDTFYSLHKSLSEKVG 97
            +  +L +R++ ++           KF C+  + P +D N LLE +T  +L+KSLS KV 
Sbjct: 365 EIGLNLDNRENHSAESAERDSIRDSKFKCDDVVGPQNDSNDLLERETVLTLYKSLSAKVA 424

Query: 96  MQYSPRCAESDNSKDSSRVRVSPFRKMWDP 7
           + +SP  +ESD S+ S + R +P RKM+DP
Sbjct: 425 LPHSPSQSESDYSRTSPKARFNPIRKMFDP 454


>ref|XP_002270125.1| PREDICTED: uncharacterized protein LOC100246220 [Vitis vinifera]
          Length = 758

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
 Frame = -3

Query: 426 DKTCPLVDKRRSTLLSLNEDSPPSDVSKCRHPTDCNDLSFRFPXXXXXXXXXXXXXXXSF 247
           D+  P+++++RS + SLN D   S V K      C+ + F  P                 
Sbjct: 132 DEEDPVLEEKRSPVKSLNSDLNASSVRK-----PCSQV-FSLPSSPGHFLTRGGSSDGFS 185

Query: 246 NVSKDLKDRKDCTS----------GKFTCNQTISPLDDGNGLLESDTFYSLHKSLSEKVG 97
            +  +L +R++ ++           KF C+  + P +D N LLE +T  +L+KSLS KV 
Sbjct: 186 EIGLNLDNRENHSAESAERDSIRDSKFKCDDVVGPQNDSNDLLERETVLTLYKSLSAKVA 245

Query: 96  MQYSPRCAESDNSKDSSRVRVSPFRKMWDP 7
           + +SP  +ESD S+ S + R +P RKM+DP
Sbjct: 246 LPHSPSQSESDYSRTSPKARFNPIRKMFDP 275


>emb|CBI34670.3| unnamed protein product [Vitis vinifera]
          Length = 1085

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/80 (42%), Positives = 49/80 (61%)
 Frame = -3

Query: 246 NVSKDLKDRKDCTSGKFTCNQTISPLDDGNGLLESDTFYSLHKSLSEKVGMQYSPRCAES 67
           N S +  +R      KF C+  + P +D N LLE +T  +L+KSLS KV + +SP  +ES
Sbjct: 692 NHSAESAERDSIRDSKFKCDDVVGPQNDSNDLLERETVLTLYKSLSAKVALPHSPSQSES 751

Query: 66  DNSKDSSRVRVSPFRKMWDP 7
           D S+ S + R +P RKM+DP
Sbjct: 752 DYSRTSPKARFNPIRKMFDP 771


>ref|XP_002509805.1| conserved hypothetical protein [Ricinus communis]
           gi|223549704|gb|EEF51192.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 736

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = -3

Query: 186 QTISPLDDGNGLLESDTFYSLHKSLSEKVGMQYSPRCAESD-NSKDSSRVRVSPFRKMWD 10
           Q + P +D N LL+ D   + H+S S KV M YSP  +ESD +SK SS+ R SP +KM+D
Sbjct: 193 QVVGPTNDANDLLDKDIALTFHRSHSVKVEMPYSPSPSESDCSSKASSKSRFSPIKKMFD 252

Query: 9   PIM 1
           P M
Sbjct: 253 PFM 255


>ref|XP_002299532.1| predicted protein [Populus trichocarpa] gi|222846790|gb|EEE84337.1|
           predicted protein [Populus trichocarpa]
          Length = 737

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = -3

Query: 198 FTCNQTISPLDDGNGLLESDTFYSLHKSLSEKVGMQYSPRCAESDNSKD-SSRVRVSPFR 22
           F C Q + PL+DGN LLE DT  +  KSLS KV +  SP  + S  S   SS+ R SP R
Sbjct: 194 FKCEQVVGPLNDGNELLERDTALTFQKSLSAKVEIPCSPSSSGSYLSNGASSKSRFSPMR 253

Query: 21  KMWDP 7
            M+DP
Sbjct: 254 MMFDP 258


Top