BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029155
         (273 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16176.3| unnamed protein product [Vitis vinifera]              110   1e-22
ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat...   110   1e-22
ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat...   105   4e-21
ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat...   103   1e-20
ref|XP_002298371.1| predicted protein [Populus trichocarpa] gi|2...   103   2e-20

>emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  110 bits (275), Expect = 1e-22
 Identities = 56/93 (60%), Positives = 68/93 (73%), Gaps = 4/93 (4%)
 Frame = -3

Query: 271 YVYTSVVRSFCELKDYVRAKVIVDEMEMN----SVVACNVLIHGLCKNGRVGEAVEVKNV 104
           YVYT+VVRS CELKD++RA+ ++  ME +    SV   NV I GLCKN RV EAVE+KN+
Sbjct: 216 YVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNL 275

Query: 103 LGCRGLKADVVTYCTLVLGLCKVFYLDLAVEMM 5
           L  +GL+ADV TYCTLVLGLCKV   +   EMM
Sbjct: 276 LSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMM 308


>ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  110 bits (275), Expect = 1e-22
 Identities = 56/93 (60%), Positives = 68/93 (73%), Gaps = 4/93 (4%)
 Frame = -3

Query: 271 YVYTSVVRSFCELKDYVRAKVIVDEMEMN----SVVACNVLIHGLCKNGRVGEAVEVKNV 104
           YVYT+VVRS CELKD++RA+ ++  ME +    SV   NV I GLCKN RV EAVE+KN+
Sbjct: 216 YVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNL 275

Query: 103 LGCRGLKADVVTYCTLVLGLCKVFYLDLAVEMM 5
           L  +GL+ADV TYCTLVLGLCKV   +   EMM
Sbjct: 276 LSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMM 308


>ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
           gi|449501214|ref|XP_004161309.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  105 bits (262), Expect = 4e-21
 Identities = 53/93 (56%), Positives = 70/93 (75%), Gaps = 4/93 (4%)
 Frame = -3

Query: 271 YVYTSVVRSFCELKDYVRAKVIVDEMEMN----SVVACNVLIHGLCKNGRVGEAVEVKNV 104
           Y+YT VV+  CELKD+ +AK I+++ E N    S+V  NV I+GLCK+ RV EAVEVK  
Sbjct: 226 YIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRS 285

Query: 103 LGCRGLKADVVTYCTLVLGLCKVFYLDLAVEMM 5
           LG +GLKAD+VTYCTLVLGLC++   ++ +EMM
Sbjct: 286 LGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMM 318


>ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  103 bits (257), Expect = 1e-20
 Identities = 53/93 (56%), Positives = 66/93 (70%), Gaps = 4/93 (4%)
 Frame = -3

Query: 271 YVYTSVVRSFCELKDYVRAKVIVDEMEMN----SVVACNVLIHGLCKNGRVGEAVEVKNV 104
           Y  ++VVRS CELKD++RAK  +  ME N    S+V  NVLIHGLCK  RV EAVEVK  
Sbjct: 226 YTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRS 285

Query: 103 LGCRGLKADVVTYCTLVLGLCKVFYLDLAVEMM 5
           LG +GL ADVVTYCTLVLG C++   +  +++M
Sbjct: 286 LGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLM 318


>ref|XP_002298371.1| predicted protein [Populus trichocarpa] gi|222845629|gb|EEE83176.1|
           predicted protein [Populus trichocarpa]
          Length = 915

 Score =  103 bits (256), Expect = 2e-20
 Identities = 52/91 (57%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
 Frame = -3

Query: 271 YVYTSVVRSFCELKDYVRAKVIVDEMEMN--SVVACNVLIHGLCKNGRVGEAVEVKNVLG 98
           Y+Y +V+RSFCELK++ +AK ++  ME +  +VV  NVLIHGLCKN RV EAVE+KN L 
Sbjct: 229 YIYVAVIRSFCELKNFAKAKEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLI 288

Query: 97  CRGLKADVVTYCTLVLGLCKVFYLDLAVEMM 5
            +GL A  VTYCTLVLGLCKV   ++   +M
Sbjct: 289 QKGLTASEVTYCTLVLGLCKVQEFEVGAGVM 319