BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029018
         (205 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containi...   102   4e-20
ref|NP_178260.1| pentatricopeptide repeat-containing protein [Ar...    92   3e-17
ref|XP_002876755.1| pentatricopeptide repeat-containing protein ...    92   6e-17
emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]    86   3e-15
ref|NP_190904.1| pentatricopeptide repeat-containing protein [Ar...    86   4e-15

>ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
           gi|297737690|emb|CBI26891.3| unnamed protein product
           [Vitis vinifera]
          Length = 610

 Score =  102 bits (253), Expect = 4e-20
 Identities = 46/67 (68%), Positives = 56/67 (83%)
 Frame = -3

Query: 203 AKCGDMNVARTIFDEMSKRNVVSWSIMIGGYAINGESEMALELFDKMHGEGVEPNHVTFL 24
           AKCGDM+ A  +FDEM +RNV+SWS +IGGYA+NGESE AL LF +M  +GV+PN+VTFL
Sbjct: 282 AKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFL 341

Query: 23  GVLSACS 3
            VLSACS
Sbjct: 342 AVLSACS 348


>ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
           gi|3785980|gb|AAC67327.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250369|gb|AEC05463.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 584

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 43/66 (65%), Positives = 51/66 (77%)
 Frame = -3

Query: 200 KCGDMNVARTIFDEMSKRNVVSWSIMIGGYAINGESEMALELFDKMHGEGVEPNHVTFLG 21
           KCG+   AR +F+EM +RNVVSWS MI GYA+NG+S  AL LF  M  EG+ PN+VTFLG
Sbjct: 257 KCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLG 316

Query: 20  VLSACS 3
           VLSACS
Sbjct: 317 VLSACS 322


>ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322593|gb|EFH53014.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 597

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 43/66 (65%), Positives = 50/66 (75%)
 Frame = -3

Query: 200 KCGDMNVARTIFDEMSKRNVVSWSIMIGGYAINGESEMALELFDKMHGEGVEPNHVTFLG 21
           KCG    AR +FD+M +RNVVSWS MI GYA+NG+S  AL LF  M  EG+ PN+VTFLG
Sbjct: 257 KCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLG 316

Query: 20  VLSACS 3
           VLSACS
Sbjct: 317 VLSACS 322


>emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]
          Length = 598

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 41/66 (62%), Positives = 50/66 (75%)
 Frame = -3

Query: 203 AKCGDMNVARTIFDEMSKRNVVSWSIMIGGYAINGESEMALELFDKMHGEGVEPNHVTFL 24
           AKCG M+ A T+F +M +R+V+SW+ +I GYAINGE E AL  F KM  E +EPN VTFL
Sbjct: 395 AKCGSMDRAETVFSKMPRRDVISWTSIIVGYAINGEGEEALLAFRKMGAEKIEPNSVTFL 454

Query: 23  GVLSAC 6
           GVLSAC
Sbjct: 455 GVLSAC 460



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 26/66 (39%), Positives = 43/66 (65%)
 Frame = -3

Query: 203 AKCGDMNVARTIFDEMSKRNVVSWSIMIGGYAINGESEMALELFDKMHGEGVEPNHVTFL 24
           +KCG + + R +FDE++  N+ SW+ MI GY   G +  AL L++ +    ++P+ VT L
Sbjct: 293 SKCGSIELGRKVFDELADENIASWNSMIYGYVECGFNIEALSLWNVIQSRKIKPDEVTML 352

Query: 23  GVLSAC 6
           G++SAC
Sbjct: 353 GLISAC 358


>ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
           gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis
           thaliana] gi|332645554|gb|AEE79075.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 41/67 (61%), Positives = 49/67 (73%)
 Frame = -3

Query: 203 AKCGDMNVARTIFDEMSKRNVVSWSIMIGGYAINGESEMALELFDKMHGEGVEPNHVTFL 24
           AKCG +  AR IFD M  R+VVSWS +I GYA +G  E AL LF +M   G+EPNHVTF+
Sbjct: 519 AKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFV 578

Query: 23  GVLSACS 3
           GVL+ACS
Sbjct: 579 GVLTACS 585



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/66 (39%), Positives = 42/66 (63%)
 Frame = -3

Query: 200 KCGDMNVARTIFDEMSKRNVVSWSIMIGGYAINGESEMALELFDKMHGEGVEPNHVTFLG 21
           KCG +  AR +FD M +RN+VS++ +I GY+ NG+   A+ L+ KM  E + P+   F  
Sbjct: 114 KCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGS 173

Query: 20  VLSACS 3
           ++ AC+
Sbjct: 174 IIKACA 179