BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029007
         (917 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24601.1| putative non-LTR retroelement reverse transcripta...    98   3e-18
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    91   5e-16
gb|ABN08723.1| Polynucleotidyl transferase, Ribonuclease H fold ...    86   1e-14
gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Ze...    84   5e-14
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    84   5e-14

>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1319

 Score = 97.8 bits (242), Expect = 3e-18
 Identities = 71/281 (25%), Positives = 128/281 (45%), Gaps = 17/281 (6%)
 Frame = +1

Query: 40   VGDGKYVSLYNDPWITVNGCPFTLEDFKNQDPNLHSLT-----VNHITLPESSTWNLNRI 204
            +G+G+  +++ D W+         +    +  NLHSL      V+H+  P +  WNL ++
Sbjct: 878  IGNGEQTNVWIDKWL--------FDGHSRRPMNLHSLMNIHMKVSHLIDPLTRNWNLKKL 929

Query: 205  GELFPIHIKNLISLIHIRPNVVS-DNLIWLGSRNGIFTVKSAYHNICRDSFTTQSSSFNT 381
             ELF  H K++  ++H RP + S D+  W G+ NG++TVKS Y    R++F       + 
Sbjct: 930  TELF--HEKDVQLIMHQRPLISSEDSYCWAGTNNGLYTVKSGYERSSRETFKNLFKEADV 987

Query: 382  -----KVVKTIWNLKVEASIQLFIWKLYFHYLPSCEKISSKAFKGDRTCCLCFKAFETDY 546
                  +   +W+L+    I++F+WK     L   +++ S+  +    C  C +  ET  
Sbjct: 988  YPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGCLFCKEEIETIN 1047

Query: 547  HLFFDCEWIKKV*FASTATVRIEAHNYSESKQWIEFFLKWLTDEYEDLQQIGL------Y 708
            HL F C + ++V   + + ++  A  +  S          +    ++ Q  G+       
Sbjct: 1048 HLLFQCPFARQV--WALSLIQAPATGFGTS------IFSNINHVIQNSQNFGIPRHMRTV 1099

Query: 709  CIVLLYEIWKHRNGIRFEHVPSSMSTIWRNTYSTWNINVEA 831
               LL+EIWK+RN   F+    + S I    Y   N+ + A
Sbjct: 1100 SPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINA 1140


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 90.5 bits (223), Expect = 5e-16
 Identities = 67/270 (24%), Positives = 120/270 (44%), Gaps = 11/270 (4%)
 Frame = +1

Query: 40   VGDGKYVSLYNDPWIT--VNGCPFTLEDFKNQDPNLHSLTVNHITLPESSTWNLNRIGEL 213
            +G+G+   ++ D W+    N  P     F N D     L V+ +  P S  WNLN + +L
Sbjct: 925  IGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVD-----LKVSQLIDPTSRNWNLNMLRDL 979

Query: 214  FPIHIKNLISLIHIRPNVVS-DNLIWLGSRNGIFTVKSAYHNICRDSFTTQSSSFNTK-- 384
            FP   K++  ++  RP     D+  WL S NG+++VK+ Y  + +            K  
Sbjct: 980  FPW--KDVEIILKQRPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPS 1037

Query: 385  ---VVKTIWNLKVEASIQLFIWKLYFHYLPSCEKISSKAFKGDRTCCLCFKAFETDYHLF 555
               +   IWNL     I++F+WK     +P  +++ ++  + D  C +C    ET  H+ 
Sbjct: 1038 VNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHIL 1097

Query: 556  FDCEWIKKV---*FASTATVRIEAHNYSESKQWIEFFLKWLTDEYEDLQQIGLYCIVLLY 726
            F+C   ++V      S+A        Y+   + I+     LT + +    +      +L+
Sbjct: 1098 FECPLARQVWAITHLSSAGSEFSNSVYTNMSRLID-----LTQQNDLPHHLRFVSPWILW 1152

Query: 727  EIWKHRNGIRFEHVPSSMSTIWRNTYSTWN 816
             +WK+RN + FE   S  +T+    Y  ++
Sbjct: 1153 FLWKNRNALLFEGKGSITTTLVDKAYEAYH 1182


>gb|ABN08723.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 355

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 3/178 (1%)
 Frame = +1

Query: 40  VGDGKYVSLYNDPWITVNGCPFTLEDFKNQDP---NLHSLTVNHITLPESSTWNLNRIGE 210
           +GDG  ++L+  PWI        L   K   P   +   LTVN++   E  +WN   +  
Sbjct: 3   IGDGSKINLWTMPWIR------NLPSHKPSTPMPAHHEDLTVNYLLNLEGLSWNQQIVTS 56

Query: 211 LFPIHIKNLISLIHIRPNVVSDNLIWLGSRNGIFTVKSAYHNICRDSFTTQSSSFNTKVV 390
           +F       I  I +   ++SD  IW  +  G +TVKSAY  IC D      S+ N    
Sbjct: 57  IFNPQDAAAILSIPLHNRLLSDTRIWKTTTTGNYTVKSAYR-ICSDLLHPHDSAHNNSSW 115

Query: 391 KTIWNLKVEASIQLFIWKLYFHYLPSCEKISSKAFKGDRTCCLCFKAFETDYHLFFDC 564
             IWNL +   ++ F+W+L  + LP+   ++++  + + +C +     E   HLFF C
Sbjct: 116 MNIWNLNIPHRVRAFLWRLAHNCLPTRVNLNARGIQCEESCVMFENFAECHTHLFFVC 173


>gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Zea mays]
          Length = 472

 Score = 84.0 bits (206), Expect = 5e-14
 Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 11/205 (5%)
 Frame = +1

Query: 1   KNLKVVTDYSIWAVGDGKYVSLYNDPWITVNGCPFTLEDFKNQDPNLHSLT--VNHITLP 174
           K L ++ +  IW +GDG  V+++ DPWI         E  +   P   SL   V  +  P
Sbjct: 20  KGLHLLKEGLIWRIGDGNQVNIWVDPWIPRG------ETRRVITPRNGSLLHKVAELIDP 73

Query: 175 ESSTWNLNRIGELFPIHIKNLISLIHIRPNVVSDNLIWLGSRNGIFTVKSAY-------- 330
            + +W+   + + F     + I  I I+  +  D L W G   G F+VKSAY        
Sbjct: 74  ITGSWDCRLVRDTFLQEDADCILAIPIQEGM-EDTLAWHGDPKGNFSVKSAYALASRRRD 132

Query: 331 -HNICRDSFTTQSSSFNTKVVKTIWNLKVEASIQLFIWKLYFHYLPSCEKISSKAFKGDR 507
            HN    S +      N  V K+IWN+ V   I++F+W+L  +  P    I+ +  K + 
Sbjct: 133 HHNNADASSSISGRGEN--VWKSIWNVNVTNKIKMFLWRLAHNSHPVRVNIARRGIKIET 190

Query: 508 TCCLCFKAFETDYHLFFDCEWIKKV 582
            C +CF+  E   HLF  C+ +K+V
Sbjct: 191 LCPMCFRLDEDGGHLFLKCKKVKQV 215


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 84.0 bits (206), Expect = 5e-14
 Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 4/245 (1%)
 Frame = +1

Query: 40   VGDGKYVSLYNDPWI-TVNGCPFTLEDFKNQDPNLHSLTVNHITLPESSTWNLNRIGELF 216
            +GDG+  +++ DPW+ ++        +  ++D     +      L  +  WN+  +  LF
Sbjct: 935  IGDGRDTTIWGDPWVPSLERYSIAATEGVSEDDGPQKVC----ELISNDRWNVELLNTLF 990

Query: 217  PIHIKNLISLIHIRPNVVSDNLIWLGSRNGIFTVKSAY-HNICRDSFTTQSSSF--NTKV 387
                   I  I +      D  +W+ S+NG FTV+SAY H +  D  T  S+S   N K+
Sbjct: 991  QPWESTAIQRIPVALQKKPDQWMWMMSKNGQFTVRSAYYHELLEDRKTGPSTSRGPNLKL 1050

Query: 388  VKTIWNLKVEASIQLFIWKLYFHYLPSCEKISSKAFKGDRTCCLCFKAFETDYHLFFDCE 567
             + IW  K+   ++LF WK   + L     +  +    D  C  C +  ET  HL + C+
Sbjct: 1051 WQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCD 1110

Query: 568  WIKKV*FASTATVRIEAHNYSESKQWIEFFLKWLTDEYEDLQQIGLYCIVLLYEIWKHRN 747
               +  + S   +          + W+E  L    D ++D +   L+ ++  + IW  RN
Sbjct: 1111 ESSRAWYISPLRIHTGNIEAGSFRIWVESLL----DTHKDTEWWALFWMI-CWNIWLGRN 1165

Query: 748  GIRFE 762
               FE
Sbjct: 1166 KWVFE 1170