BLASTX nr result

ID: Coptis24_contig00028997 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028997
         (227 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002440532.1| hypothetical protein SORBIDRAFT_09g002650 [S...    69   5e-10
ref|XP_002277366.2| PREDICTED: uncharacterized protein LOC100266...    67   2e-09
emb|CBI39618.3| unnamed protein product [Vitis vinifera]               67   2e-09
gb|AFW82724.1| hypothetical protein ZEAMMB73_548849 [Zea mays] g...    65   6e-09
ref|XP_003600726.1| hypothetical protein MTR_3g065560 [Medicago ...    65   6e-09

>ref|XP_002440532.1| hypothetical protein SORBIDRAFT_09g002650 [Sorghum bicolor]
           gi|241945817|gb|EES18962.1| hypothetical protein
           SORBIDRAFT_09g002650 [Sorghum bicolor]
          Length = 447

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 33/74 (44%), Positives = 46/74 (62%)
 Frame = +1

Query: 1   QGSWFTAAIISPSLNNDNKFLVQYHTLLEENGVDPLEEYVHVSHLRPGQPKETTPTTVFK 180
           +G+WF A I+ P     +KFLV+Y TL +++   PL+E V   H+RP  P E   +  FK
Sbjct: 327 RGAWFEATIVKPV---GSKFLVEYATLKDDDDTKPLKETVEARHIRP-CPPEIPVSDGFK 382

Query: 181 LNQKVDVYCNDGWW 222
           L  +VD +CNDGWW
Sbjct: 383 LLDEVDAFCNDGWW 396


>ref|XP_002277366.2| PREDICTED: uncharacterized protein LOC100266586 [Vitis vinifera]
          Length = 296

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
 Frame = +1

Query: 1   QGSWFTAAIISPSLNNDNKFLV--QYHTLL-EENGVDPLEEYVHVSHLRPGQPKETTPTT 171
           +G+WF   ++ P     NK LV  +Y T++ +E+G +PL E + V  LRP  P+E + T 
Sbjct: 20  RGAWFAGTVVKPPAKKKNKTLVVVEYKTIMADESGANPLRETMDVLQLRPPPPRERSRT- 78

Query: 172 VFKLNQKVDVYCNDGWWK 225
            F+++++VD Y NDGWW+
Sbjct: 79  -FQISEEVDAYYNDGWWE 95



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 28/74 (37%), Positives = 41/74 (55%)
 Frame = +1

Query: 1   QGSWFTAAIISPSLNNDNKFLVQYHTLLEENGVDPLEEYVHVSHLRPGQPKETTPTTVFK 180
           QG+WF A I+   +   +K +++Y +L  ++  D L E V   H+RP  P ET     F 
Sbjct: 175 QGAWFAATIVK--VIGKDKLMIEYKSLRTDDDTDFLREEVDALHIRP-YPPETVVVDRFN 231

Query: 181 LNQKVDVYCNDGWW 222
           L ++VD   NDGWW
Sbjct: 232 LLEEVDALYNDGWW 245


>emb|CBI39618.3| unnamed protein product [Vitis vinifera]
          Length = 315

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
 Frame = +1

Query: 1   QGSWFTAAIISPSLNNDNKFLV--QYHTLL-EENGVDPLEEYVHVSHLRPGQPKETTPTT 171
           +G+WF   ++ P     NK LV  +Y T++ +E+G +PL E + V  LRP  P+E + T 
Sbjct: 39  RGAWFAGTVVKPPAKKKNKTLVVVEYKTIMADESGANPLRETMDVLQLRPPPPRERSRT- 97

Query: 172 VFKLNQKVDVYCNDGWWK 225
            F+++++VD Y NDGWW+
Sbjct: 98  -FQISEEVDAYYNDGWWE 114



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 28/74 (37%), Positives = 41/74 (55%)
 Frame = +1

Query: 1   QGSWFTAAIISPSLNNDNKFLVQYHTLLEENGVDPLEEYVHVSHLRPGQPKETTPTTVFK 180
           QG+WF A I+   +   +K +++Y +L  ++  D L E V   H+RP  P ET     F 
Sbjct: 194 QGAWFAATIVK--VIGKDKLMIEYKSLRTDDDTDFLREEVDALHIRP-YPPETVVVDRFN 250

Query: 181 LNQKVDVYCNDGWW 222
           L ++VD   NDGWW
Sbjct: 251 LLEEVDALYNDGWW 264


>gb|AFW82724.1| hypothetical protein ZEAMMB73_548849 [Zea mays]
           gi|413950076|gb|AFW82725.1| hypothetical protein
           ZEAMMB73_548849 [Zea mays] gi|413950077|gb|AFW82726.1|
           hypothetical protein ZEAMMB73_548849 [Zea mays]
          Length = 275

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 31/74 (41%), Positives = 44/74 (59%)
 Frame = +1

Query: 1   QGSWFTAAIISPSLNNDNKFLVQYHTLLEENGVDPLEEYVHVSHLRPGQPKETTPTTVFK 180
           +G+WF A ++       +KFLV+Y TL  ++G  PL+E V   H+RP  P +   T  FK
Sbjct: 155 RGAWFEATVVKAV---GSKFLVEYATLKADDGTKPLKESVEARHIRP-CPPDIPATDGFK 210

Query: 181 LNQKVDVYCNDGWW 222
           L  +VD +CND WW
Sbjct: 211 LLDEVDAFCNDAWW 224


>ref|XP_003600726.1| hypothetical protein MTR_3g065560 [Medicago truncatula]
           gi|355489774|gb|AES70977.1| hypothetical protein
           MTR_3g065560 [Medicago truncatula]
          Length = 146

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 34/73 (46%), Positives = 46/73 (63%)
 Frame = +1

Query: 4   GSWFTAAIISPSLNNDNKFLVQYHTLLEENGVDPLEEYVHVSHLRPGQPKETTPTTVFKL 183
           GS+F A I++   N +  ++V+Y  LLE +   PLEE +    LRP  P    P+  F+L
Sbjct: 27  GSYFEAKIVACLENGE--YVVRYKNLLENDESGPLEETLLSKDLRPIPPSVQNPSA-FQL 83

Query: 184 NQKVDVYCNDGWW 222
           NQKVDV+CNDGWW
Sbjct: 84  NQKVDVFCNDGWW 96


Top