BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028830
         (318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat...   133   2e-29
ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   132   2e-29
emb|CBI41082.3| unnamed protein product [Vitis vinifera]              132   2e-29
gb|ACE80866.1| pentatricopeptide repeat protein [Cyathea smithii]     130   9e-29
ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [S...   128   4e-28

>ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  133 bits (334), Expect = 2e-29
 Identities = 59/104 (56%), Positives = 78/104 (75%)
 Frame = +1

Query: 1   GVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIYKKLDEIVTRLKTEGYAPCTSSALHDV 180
           G++K+PGCSSI VNN ++EFF+GD  H   K IYKKL+E+    K EGY P T  ALHD+
Sbjct: 490 GIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEVALHDI 549

Query: 181 DMDEKEQALLHHSEKLAVAFGLISTDHKTPIRIVKNLRVCDDCH 312
           D ++KE AL  HSE+LA+ +GL+ST+  T +R+ KNLR+CDDCH
Sbjct: 550 DDEQKELALAVHSERLAICYGLVSTEAYTTLRVGKNLRICDDCH 593


>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  132 bits (333), Expect = 2e-29
 Identities = 65/104 (62%), Positives = 77/104 (74%)
 Frame = +1

Query: 4   VVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIYKKLDEIVTRLKTEGYAPCTSSALHDVD 183
           + K PG SSI V+N V+EF AGD++H  SK+I + L EI  RLK  GYAP T+S L D D
Sbjct: 502 IQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFD 561

Query: 184 MDEKEQALLHHSEKLAVAFGLISTDHKTPIRIVKNLRVCDDCHL 315
             EKE AL HHSEKLA+AFGL+ST   + IRIVKNLRVCDDCH+
Sbjct: 562 EKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHI 605


>emb|CBI41082.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  132 bits (333), Expect = 2e-29
 Identities = 65/104 (62%), Positives = 77/104 (74%)
 Frame = +1

Query: 4   VVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIYKKLDEIVTRLKTEGYAPCTSSALHDVD 183
           + K PG SSI V+N V+EF AGD++H  SK+I + L EI  RLK  GYAP T+S L D D
Sbjct: 275 IQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFD 334

Query: 184 MDEKEQALLHHSEKLAVAFGLISTDHKTPIRIVKNLRVCDDCHL 315
             EKE AL HHSEKLA+AFGL+ST   + IRIVKNLRVCDDCH+
Sbjct: 335 EKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHI 378


>gb|ACE80866.1| pentatricopeptide repeat protein [Cyathea smithii]
          Length = 152

 Score =  130 bits (328), Expect = 9e-29
 Identities = 60/104 (57%), Positives = 80/104 (76%)
 Frame = +1

Query: 1   GVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIYKKLDEIVTRLKTEGYAPCTSSALHDV 180
           GV K+ GCS+I V N+V+EF   DR+H R++EIY +L+++  ++K EGY P TS  LHDV
Sbjct: 20  GVKKQAGCSTIEVGNMVHEFIVRDRSHPRTEEIYAELEKLKLQMKAEGYVPDTSLVLHDV 79

Query: 181 DMDEKEQALLHHSEKLAVAFGLISTDHKTPIRIVKNLRVCDDCH 312
           + + KE  L++HSEKLA+AFGLIST H TP+ IVKNLR+C DCH
Sbjct: 80  EEELKEHLLIYHSEKLAMAFGLISTPHGTPLHIVKNLRLCSDCH 123


>ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
           gi|241923768|gb|EER96912.1| hypothetical protein
           SORBIDRAFT_02g027420 [Sorghum bicolor]
          Length = 573

 Score =  128 bits (322), Expect = 4e-28
 Identities = 62/105 (59%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
 Frame = +1

Query: 1   GVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIYKKLDEIVTRLKTEGYAPCTSSALHDV 180
           GV+K PG SS+ +N V++EF +GD++HSR ++IYK LDEI  +LK+ GY P TS  L D+
Sbjct: 447 GVLKTPGSSSVELNGVIHEFISGDKSHSRKRDIYKMLDEICQQLKSAGYTPDTSQVLLDI 506

Query: 181 -DMDEKEQALLHHSEKLAVAFGLISTDHKTPIRIVKNLRVCDDCH 312
            D D KE +L  HSEKLA+AFGLIST   TPIR+V NLR+C DCH
Sbjct: 507 DDEDVKESSLAVHSEKLAIAFGLISTAPGTPIRVVNNLRICGDCH 551