BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028812
         (311 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002884209.1| pentatricopeptide repeat-containing protein ...    75   7e-12
ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis th...    73   3e-11
emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]    69   4e-10
emb|CBI27471.3| unnamed protein product [Vitis vinifera]               68   7e-10
ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containi...    68   7e-10

>ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330049|gb|EFH60468.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 534

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 37/101 (36%), Positives = 58/101 (57%)
 Frame = -3

Query: 306 FSYTFLIKQLTSSKRYLQSLFVFKKLLNNFSKPADPFLFPSLFKSCVSLNTPNVGFSIHG 127
           F Y  +I+  T +  Y   + ++K+LL    +  D F FP +FKSC SL +  +G  +HG
Sbjct: 74  FLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHG 133

Query: 126 YIVKCGFGDWVFNSHSLVSMYSKFGRVFDVYLLFDEMSDRD 4
           ++ K G    V   ++L+ MY KF  + D + +FDEMS+RD
Sbjct: 134 HLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERD 174


>ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
           gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g20540 gi|4586036|gb|AAD25654.1| unknown protein
           [Arabidopsis thaliana] gi|67633530|gb|AAY78689.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana] gi|330251931|gb|AEC07025.1| mitochondrial
           editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 36/101 (35%), Positives = 57/101 (56%)
 Frame = -3

Query: 306 FSYTFLIKQLTSSKRYLQSLFVFKKLLNNFSKPADPFLFPSLFKSCVSLNTPNVGFSIHG 127
           F Y  +I+  T +  Y   + ++K+LL    +  D F FP +FKSC SL +  +G  +HG
Sbjct: 74  FLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHG 133

Query: 126 YIVKCGFGDWVFNSHSLVSMYSKFGRVFDVYLLFDEMSDRD 4
           ++ K G    V   ++L+ MY KF  + D + +FDEM +RD
Sbjct: 134 HLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERD 174


>emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 34/102 (33%), Positives = 62/102 (60%)
 Frame = -3

Query: 309 TFSYTFLIKQLTSSKRYLQSLFVFKKLLNNFSKPADPFLFPSLFKSCVSLNTPNVGFSIH 130
           TF +  +I+  ++SK   ++L ++  +L + S P + + FP L K+C S++       IH
Sbjct: 83  TFMWNTMIRGYSNSKEPEEALLLYHHMLYH-SVPHNAYTFPFLLKACSSMSASEETQQIH 141

Query: 129 GYIVKCGFGDWVFNSHSLVSMYSKFGRVFDVYLLFDEMSDRD 4
            +I+K GFG  ++ ++SL+++YSK G +    LLFD++  RD
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD 183


>emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 34/102 (33%), Positives = 62/102 (60%)
 Frame = -3

Query: 309 TFSYTFLIKQLTSSKRYLQSLFVFKKLLNNFSKPADPFLFPSLFKSCVSLNTPNVGFSIH 130
           TF +  +I+  ++SK   ++L ++  +L + S P + + FP L K+C S++       IH
Sbjct: 83  TFMWNTMIRGYSNSKEPEEALLLYHHMLYH-SVPHNAYTFPFLLKACSSMSALEETQQIH 141

Query: 129 GYIVKCGFGDWVFNSHSLVSMYSKFGRVFDVYLLFDEMSDRD 4
            +I+K GFG  ++ ++SL+++YSK G +    LLFD++  RD
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD 183


>ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 34/102 (33%), Positives = 62/102 (60%)
 Frame = -3

Query: 309 TFSYTFLIKQLTSSKRYLQSLFVFKKLLNNFSKPADPFLFPSLFKSCVSLNTPNVGFSIH 130
           TF +  +I+  ++SK   ++L ++  +L + S P + + FP L K+C S++       IH
Sbjct: 83  TFMWNTMIRGYSNSKEPEEALLLYHHMLYH-SVPHNAYTFPFLLKACSSMSALEETQQIH 141

Query: 129 GYIVKCGFGDWVFNSHSLVSMYSKFGRVFDVYLLFDEMSDRD 4
            +I+K GFG  ++ ++SL+++YSK G +    LLFD++  RD
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD 183