BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028762
         (476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containi...   253   1e-65
ref|XP_002517126.1| pentatricopeptide repeat-containing protein,...   221   5e-56
ref|XP_003617141.1| Pentatricopeptide repeat-containing protein ...   218   4e-55
ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   216   1e-54
ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containi...   216   1e-54

>ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  253 bits (646), Expect = 1e-65
 Identities = 117/157 (74%), Positives = 140/157 (89%)
 Frame = +1

Query: 1   ANGLVDFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGV 180
           ANGL+DFYGK HQ+  +E+IF+GIS+PN VSW SM+ SYVQNDE+EKACLVFL++RKEG+
Sbjct: 247 ANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGI 306

Query: 181 DPTDFMISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAER 360
           +PTDFM+SSVLSACAGL+ LE+GKSVH L VK CV  N++VGS+LVDMYGKCG+IEDAER
Sbjct: 307 EPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAER 366

Query: 361 AFNGMLQRNLITWNAMIGGYAHQGHADMALALFKEMT 471
           AF+ M +RNL+TWNAMIGGYAHQG ADMA+ LF EMT
Sbjct: 367 AFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMT 403



 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 53/154 (34%), Positives = 80/154 (51%)
 Frame = +1

Query: 4   NGLVDFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGVD 183
           N LV+ Y K  + +SA+++ +     + V+W++++A  VQN     A   F   R++ + 
Sbjct: 46  NHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQ 105

Query: 184 PTDFMISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAERA 363
           P DF       A   L +  +GK VH L VK     +V+VG S  DMY K G  E+A + 
Sbjct: 106 PNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKM 165

Query: 364 FNGMLQRNLITWNAMIGGYAHQGHADMALALFKE 465
           F+ M +RN+ TWNA +     +G  D AL  F E
Sbjct: 166 FDEMPERNIATWNAYLSNSVLEGRYDDALTAFIE 199



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 42/148 (28%), Positives = 77/148 (52%)
 Frame = +1

Query: 16  DFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGVDPTDF 195
           D Y K    + A  +F+ + E N  +W++ +++ V     + A   F++ R EG +P   
Sbjct: 151 DMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLI 210

Query: 196 MISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAERAFNGM 375
              + L+ACAG + L LG+ +H   ++   + +V V + L+D YGKC  +  +E  F+G+
Sbjct: 211 TFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGI 270

Query: 376 LQRNLITWNAMIGGYAHQGHADMALALF 459
            + N ++W +MI  Y      + A  +F
Sbjct: 271 SKPNDVSWCSMIVSYVQNDEEEKACLVF 298


>ref|XP_002517126.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543761|gb|EEF45289.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 463

 Score =  221 bits (563), Expect = 5e-56
 Identities = 100/156 (64%), Positives = 130/156 (83%)
 Frame = +1

Query: 4   NGLVDFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGVD 183
           NGL+DFYGK  ++  AE++F  +   N VSW SMVA+  QN E+EKACL F++ RKEG++
Sbjct: 248 NGLIDFYGKCKEVRLAEMVFGKMENRNAVSWCSMVAACEQNGEEEKACLFFVEGRKEGIE 307

Query: 184 PTDFMISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAERA 363
           PTD+M+SSV+SACAGLA LELG+S H L VK C++ +++VGS+LVDMYGKCG IED+E+A
Sbjct: 308 PTDYMVSSVISACAGLAGLELGRSFHALAVKACLEGDIFVGSALVDMYGKCGGIEDSEQA 367

Query: 364 FNGMLQRNLITWNAMIGGYAHQGHADMALALFKEMT 471
           F+ M +RNL+TWNA+IGGYAHQGHA+MA+ LFKEMT
Sbjct: 368 FHEMSERNLVTWNALIGGYAHQGHAEMAVRLFKEMT 403



 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 49/156 (31%), Positives = 79/156 (50%)
 Frame = +1

Query: 1   ANGLVDFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGV 180
           +N L+  Y K    +SA+++ +     + V+W+S+++  VQN     A   F   R++ +
Sbjct: 45  SNHLISMYSKLDLPNSAQLVLHLTPTRSVVTWTSLISGSVQNGHFSFALYHFFNMRRDNI 104

Query: 181 DPTDFMISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAER 360
            P DF       A A L    +GK +H + VK     +V+VG S  DMY K G  +DA++
Sbjct: 105 QPNDFTFPCAFKASASLLLPFVGKQIHAIAVKFGQINDVFVGCSAFDMYSKTGLKQDAQK 164

Query: 361 AFNGMLQRNLITWNAMIGGYAHQGHADMALALFKEM 468
            F+ + +RN++TWNA I      G    A   F E+
Sbjct: 165 LFDELPERNVVTWNAYISNAVLYGRYQNAAVAFVEL 200



 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 41/150 (27%), Positives = 75/150 (50%)
 Frame = +1

Query: 16  DFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGVDPTDF 195
           D Y K      A+ +F+ + E N V+W++ +++ V     + A + F++ R+ G +P   
Sbjct: 151 DMYSKTGLKQDAQKLFDELPERNVVTWNAYISNAVLYGRYQNAAVAFVELRRAGCEPDST 210

Query: 196 MISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAERAFNGM 375
                 +ACA    ++LG+ +H   ++   +++V V + L+D YGKC  +  AE  F  M
Sbjct: 211 TFCVFFNACADQLYVDLGRQLHGFVIRSGFEKSVSVLNGLIDFYGKCKEVRLAEMVFGKM 270

Query: 376 LQRNLITWNAMIGGYAHQGHADMALALFKE 465
             RN ++W +M+      G  + A   F E
Sbjct: 271 ENRNAVSWCSMVAACEQNGEEEKACLFFVE 300


>ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355518476|gb|AET00100.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  218 bits (555), Expect = 4e-55
 Identities = 107/158 (67%), Positives = 133/158 (84%), Gaps = 1/158 (0%)
 Frame = +1

Query: 1   ANGLVDFYGKNHQIDSAEVIFNGI-SEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEG 177
           ANGL+DFYGK   I SAE++FN I +  N VSW SM+A+ VQN E+E+AC+VFL++RKE 
Sbjct: 247 ANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKE- 305

Query: 178 VDPTDFMISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAE 357
           V+PTDFMISSVLSACA L  LELG+SVH L VK CV++N++VGS+LVDMYGKCG+IE+AE
Sbjct: 306 VEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAE 365

Query: 358 RAFNGMLQRNLITWNAMIGGYAHQGHADMALALFKEMT 471
           + F+ + +RNL+TWNAMIGGYAHQG  DMAL LF+EMT
Sbjct: 366 QVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMT 403



 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 55/155 (35%), Positives = 78/155 (50%)
 Frame = +1

Query: 1   ANGLVDFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGV 180
           +N LV+ Y K   ++SA+ + +       V+W+S+++  V N     A L F   R++ V
Sbjct: 45  SNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNV 104

Query: 181 DPTDFMISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAER 360
            P DF    V  A A +     GK +H L +KG +  +V+VG S  DMY K G   DA  
Sbjct: 105 QPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACN 164

Query: 361 AFNGMLQRNLITWNAMIGGYAHQGHADMALALFKE 465
            F+ M QRNL TWNA I        +  A+  FKE
Sbjct: 165 MFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKE 199



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 1/149 (0%)
 Frame = +1

Query: 16  DFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGVDPTDF 195
           D Y K      A  +F+ + + N  +W++ +++ VQ+     A + F +      +P   
Sbjct: 151 DMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSI 210

Query: 196 MISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAERAFNGM 375
              + L+AC  +  L LG+ +H   V+    E+V V + L+D YGKCG+I  AE  FN +
Sbjct: 211 TFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRI 270

Query: 376 LQR-NLITWNAMIGGYAHQGHADMALALF 459
             R N+++W +M+         + A  +F
Sbjct: 271 GNRKNVVSWCSMLAALVQNHEEERACMVF 299


>ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  216 bits (551), Expect = 1e-54
 Identities = 94/157 (59%), Positives = 135/157 (85%)
 Frame = +1

Query: 1   ANGLVDFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGV 180
           +NGL+DFYGK  +++ +E++F+ + E N VSWSS++A+YVQN+E+EKA  +FL++RKE +
Sbjct: 247 SNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDI 306

Query: 181 DPTDFMISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAER 360
           +PTDFM+SSVL ACAGL+ +E G+SV  L VK CV++N++V S+LVDMYGKCG+I++AE+
Sbjct: 307 EPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQ 366

Query: 361 AFNGMLQRNLITWNAMIGGYAHQGHADMALALFKEMT 471
           AFN M +RNL++WNA++GGYAHQGHA+ A+AL +EMT
Sbjct: 367 AFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMT 403



 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 56/155 (36%), Positives = 80/155 (51%)
 Frame = +1

Query: 4   NGLVDFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGVD 183
           N LV+ Y K   ++SA++I       + V+W++++A  VQN     A L F     + V 
Sbjct: 46  NHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVR 105

Query: 184 PTDFMISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAERA 363
           P DF    VL A  GL     GK +H L VK  +  +V+VG S+ DMY K G + DA + 
Sbjct: 106 PNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKV 165

Query: 364 FNGMLQRNLITWNAMIGGYAHQGHADMALALFKEM 468
           F+ M  RNL TWNA I      G  + ++  F E+
Sbjct: 166 FDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIEL 200



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 40/148 (27%), Positives = 75/148 (50%)
 Frame = +1

Query: 16  DFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGVDPTDF 195
           D Y K   ++ A  +F+ +   N  +W++ +++ V +   E + + F++  + G  P   
Sbjct: 151 DMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSI 210

Query: 196 MISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAERAFNGM 375
                L+AC+    L  G  +H   ++    +NV V + L+D YGKCG +E +E  F+ M
Sbjct: 211 TFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRM 270

Query: 376 LQRNLITWNAMIGGYAHQGHADMALALF 459
            +RN ++W+++I  Y      + A  LF
Sbjct: 271 GERNSVSWSSLIAAYVQNNEEEKASCLF 298


>ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  216 bits (551), Expect = 1e-54
 Identities = 94/157 (59%), Positives = 135/157 (85%)
 Frame = +1

Query: 1   ANGLVDFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGV 180
           +NGL+DFYGK  +++ +E++F+ + E N VSWSS++A+YVQN+E+EKA  +FL++RKE +
Sbjct: 247 SNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDI 306

Query: 181 DPTDFMISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAER 360
           +PTDFM+SSVL ACAGL+ +E G+SV  L VK CV++N++V S+LVDMYGKCG+I++AE+
Sbjct: 307 EPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQ 366

Query: 361 AFNGMLQRNLITWNAMIGGYAHQGHADMALALFKEMT 471
           AFN M +RNL++WNA++GGYAHQGHA+ A+AL +EMT
Sbjct: 367 AFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMT 403



 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 56/155 (36%), Positives = 80/155 (51%)
 Frame = +1

Query: 4   NGLVDFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGVD 183
           N LV+ Y K   ++SA++I       + V+W++++A  VQN     A L F     + V 
Sbjct: 46  NHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVR 105

Query: 184 PTDFMISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAERA 363
           P DF    VL A  GL     GK +H L VK  +  +V+VG S+ DMY K G + DA + 
Sbjct: 106 PNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKV 165

Query: 364 FNGMLQRNLITWNAMIGGYAHQGHADMALALFKEM 468
           F+ M  RNL TWNA I      G  + ++  F E+
Sbjct: 166 FDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIEL 200



 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 40/148 (27%), Positives = 76/148 (51%)
 Frame = +1

Query: 16  DFYGKNHQIDSAEVIFNGISEPNYVSWSSMVASYVQNDEDEKACLVFLKSRKEGVDPTDF 195
           D Y K   ++ A  +F+ +   N  +W++ +++ V +   E + + F++  + G  P   
Sbjct: 151 DMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSI 210

Query: 196 MISSVLSACAGLAALELGKSVHCLGVKGCVDENVYVGSSLVDMYGKCGNIEDAERAFNGM 375
              + L+AC+    L  G  +H   ++    +NV V + L+D YGKCG +E +E  F+ M
Sbjct: 211 TFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRM 270

Query: 376 LQRNLITWNAMIGGYAHQGHADMALALF 459
            +RN ++W+++I  Y      + A  LF
Sbjct: 271 GERNSVSWSSLIAAYVQNNEEEKASCLF 298