BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028759
         (691 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002328242.1| predicted protein [Populus trichocarpa] gi|2...   100   2e-39
ref|XP_004148164.1| PREDICTED: pentatricopeptide repeat-containi...    96   5e-38
ref|XP_004160885.1| PREDICTED: pentatricopeptide repeat-containi...    94   1e-37
ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containi...   118   1e-24
emb|CBI24516.3| unnamed protein product [Vitis vinifera]              118   1e-24

>ref|XP_002328242.1| predicted protein [Populus trichocarpa] gi|222837757|gb|EEE76122.1|
           predicted protein [Populus trichocarpa]
          Length = 893

 Score =  100 bits (248), Expect(2) = 2e-39
 Identities = 48/106 (45%), Positives = 70/106 (66%)
 Frame = +3

Query: 366 LPNEVFSVFISALSAAGKTNHALNVFNKMIIYGCEPLLSSYNSLIRTLCQEAHVKEAEFL 545
           L N    +++SAL   GKT  AL+    M+  GC PLL ++NSLI+ L Q+   ++ + L
Sbjct: 478 LGNVAGGIYVSALCEGGKTESALDCLENMVNAGCVPLLFTFNSLIKRLFQDGLSEDVKSL 537

Query: 546 VDRMCGQGLVPNLATYLVMINEHCKQGDMWMAFEVLEKMDEKGLSP 683
           ++ M   G+ PNL TYL+M+NE+CKQ D+ +AF +LE+MDE GL P
Sbjct: 538 IEIMQNWGISPNLETYLIMVNEYCKQEDLALAFGILEQMDEMGLKP 583



 Score = 89.0 bits (219), Expect(2) = 2e-39
 Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
 Frame = +2

Query: 2   DCALKLLHNMISCTVCPNVHCYTVIISSL*KENRFDEADDLFDKMSSSNVAPDHVLYLYL 181
           DCA+ LL++M  C + P VHCYT I+ +L K NR  E D+  ++M  S + PDHVL+  L
Sbjct: 355 DCAMSLLNSMAPCNLTPCVHCYTPIMVTLYKLNRCLEVDEWCERMLESGIVPDHVLFFVL 414

Query: 182 ENNYPKGQ--EFNVLLLVSKVLTKHGLNVDLSWLCSSSTFHTEKTFENDIELLFSRILGS 355
             N PKG   E  + LL+ + + K+G  +D S L +S   ++    E +IELL   I  S
Sbjct: 415 MKNKPKGLGFELQLCLLMLQAIAKNGCGLDCSSLTNSDKINSTLALEQEIELLLREIARS 474



 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
 Frame = +3

Query: 366  LPNEV-FSVFISALSAAGKTNHALNVFNKMIIYGCE-PLLSSYNSLIRTLCQEAHVKEAE 539
            LPNEV F++ I A   AG+ + A+ +FN+M   GC  P   +YN+L+++LC+     +A 
Sbjct: 717  LPNEVTFTILIGAHGRAGEIDRAIGLFNRMNADGCSTPDRCTYNTLLKSLCRSGRELDAL 776

Query: 540  FLVDRMCGQGLVPNLATYLVMINEHCKQGDMWMAFEVLEKMDEKGLSP 683
             LV  +  +G  PN   Y    +  C       AF + E+M    L P
Sbjct: 777  SLVHTISKRGFFPNRLAYEKSHHYFCAGHMSIPAFRIFEEMVACNLVP 824


>ref|XP_004148164.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g62370-like [Cucumis sativus]
          Length = 693

 Score = 95.5 bits (236), Expect(2) = 5e-38
 Identities = 46/106 (43%), Positives = 67/106 (63%)
 Frame = +3

Query: 366 LPNEVFSVFISALSAAGKTNHALNVFNKMIIYGCEPLLSSYNSLIRTLCQEAHVKEAEFL 545
           L    FS+ ISAL       +AL+  + M+  GC+PLL +YNSLIR LC+E   ++A  L
Sbjct: 465 LAGVAFSIVISALCETENFCYALDYLHNMVSLGCKPLLFTYNSLIRRLCKERLFEDAMSL 524

Query: 546 VDRMCGQGLVPNLATYLVMINEHCKQGDMWMAFEVLEKMDEKGLSP 683
           +D M    L PN  TYL+++NE+C+QG++  A+ +L KM + GL P
Sbjct: 525 IDHMKDYSLFPNTTTYLIIVNEYCRQGNVTAAYHILRKMRQVGLKP 570



 Score = 88.6 bits (218), Expect(2) = 5e-38
 Identities = 42/115 (36%), Positives = 66/115 (57%)
 Frame = +2

Query: 2   DCALKLLHNMISCTVCPNVHCYTVIISSL*KENRFDEADDLFDKMSSSNVAPDHVLYLYL 181
           D AL +L++M+S  + P+VHCYTV+ S+L +  R +E D L   M  + + PDHVL+L L
Sbjct: 344 DSALMILNSMVSSNLSPSVHCYTVLSSALYRNGRLEEVDGLLKGMLDNGIIPDHVLFLTL 403

Query: 182 ENNYPKGQEFNVLLLVSKVLTKHGLNVDLSWLCSSSTFHTEKTFENDIELLFSRI 346
              YPKG E  + L + + + K+G   D S + +S+ + T    E   E++   I
Sbjct: 404 MKMYPKGHELQLALNILETIVKNGCGCDPSVILASAEWQTSSNLEQKFEIVLKEI 458



 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
 Frame = +3

Query: 270 LGCVVLPLFIRKRHLRMI*SSCLAESWVAL-------KFLPNEV-FSVFISALSAAGKTN 425
           LGC  L LF     +R +    L E  ++L          PN   + + ++     G   
Sbjct: 496 LGCKPL-LFTYNSLIRRLCKERLFEDAMSLIDHMKDYSLFPNTTTYLIIVNEYCRQGNVT 554

Query: 426 HALNVFNKMIIYGCEPLLSSYNSLIRTLCQEAHVKEAEFLVDRMCGQGLVPNLATYLVMI 605
            A ++  KM   G +P ++ Y+S+IR L +E  + EAE +   M   G+ P+   YL MI
Sbjct: 555 AAYHILRKMRQVGLKPSVAIYDSIIRCLSREKRICEAEVVFKMMLEAGMDPDKKFYLTMI 614

Query: 606 NEHCKQGDMWMAFEVLEKMDEKGLSPVS 689
             + K G +  A E+ E+M E  + P S
Sbjct: 615 KGYSKNGRILEACELFEQMVENSIPPSS 642


>ref|XP_004160885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g62370-like [Cucumis sativus]
          Length = 693

 Score = 94.4 bits (233), Expect(2) = 1e-37
 Identities = 46/106 (43%), Positives = 66/106 (62%)
 Frame = +3

Query: 366 LPNEVFSVFISALSAAGKTNHALNVFNKMIIYGCEPLLSSYNSLIRTLCQEAHVKEAEFL 545
           L    FS+ ISAL       +AL+  + M+  GC+PLL +YNSLIR LC+E   ++A  L
Sbjct: 465 LAGVAFSIVISALCETENFCYALDYLHNMVSLGCKPLLFTYNSLIRRLCKERLFEDAMSL 524

Query: 546 VDRMCGQGLVPNLATYLVMINEHCKQGDMWMAFEVLEKMDEKGLSP 683
           +D M    L PN  TYL+++NE+C+QG++  A+  L KM + GL P
Sbjct: 525 IDHMKDYSLFPNTTTYLIIVNEYCRQGNVTAAYHTLRKMRQVGLKP 570



 Score = 88.6 bits (218), Expect(2) = 1e-37
 Identities = 42/115 (36%), Positives = 66/115 (57%)
 Frame = +2

Query: 2   DCALKLLHNMISCTVCPNVHCYTVIISSL*KENRFDEADDLFDKMSSSNVAPDHVLYLYL 181
           D AL +L++M+S  + P+VHCYTV+ S+L +  R +E D L   M  + + PDHVL+L L
Sbjct: 344 DSALMILNSMVSSNLSPSVHCYTVLSSALYRNGRLEEVDGLLKGMLDNGIIPDHVLFLTL 403

Query: 182 ENNYPKGQEFNVLLLVSKVLTKHGLNVDLSWLCSSSTFHTEKTFENDIELLFSRI 346
              YPKG E  + L + + + K+G   D S + +S+ + T    E   E++   I
Sbjct: 404 MKMYPKGHELQLALNILETIVKNGCGCDPSVILASAEWQTSSNLEQKFEIVLKEI 458



 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
 Frame = +3

Query: 270 LGCVVLPLFIRKRHLRMI*SSCLAESWVAL-------KFLPNEV-FSVFISALSAAGKTN 425
           LGC  L LF     +R +    L E  ++L          PN   + + ++     G   
Sbjct: 496 LGCKPL-LFTYNSLIRRLCKERLFEDAMSLIDHMKDYSLFPNTTTYLIIVNEYCRQGNVT 554

Query: 426 HALNVFNKMIIYGCEPLLSSYNSLIRTLCQEAHVKEAEFLVDRMCGQGLVPNLATYLVMI 605
            A +   KM   G +P ++ Y+S+IR L +E  + EAE +   M   G+ P+   YL MI
Sbjct: 555 AAYHTLRKMRQVGLKPSVAIYDSIIRCLSREKRICEAEVVFKMMLEAGMDPDKKFYLTMI 614

Query: 606 NEHCKQGDMWMAFEVLEKMDEKGLSPVS 689
             + K G +  A E+ E+M E  + P S
Sbjct: 615 KGYSKNGRILEACELFEQMVENSIPPSS 642


>ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g62370-like [Vitis vinifera]
          Length = 1101

 Score =  118 bits (296), Expect = 1e-24
 Identities = 61/118 (51%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
 Frame = +3

Query: 333 CLAESWVALKF-LPNEVFSVFISALSAAGKTNHALNVFNKMIIYGCEPLLSSYNSLIRTL 509
           CL    V   F L +  F +FISAL AAGKT+ AL   +KM+  GC PLLS+YNSLI+ L
Sbjct: 465 CLLGEIVRRNFALADVAFGIFISALCAAGKTDAALLFMDKMVSLGCRPLLSTYNSLIKCL 524

Query: 510 CQEAHVKEAEFLVDRMCGQGLVPNLATYLVMINEHCKQGDMWMAFEVLEKMDEKGLSP 683
            QE  V++A+ L+D M   G+VP+LATYL+M++EHC  GD+  AF +L++M+E+GL P
Sbjct: 525 FQERLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHGDLASAFGLLDQMNERGLKP 582



 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 53/134 (39%), Positives = 76/134 (56%)
 Frame = +2

Query: 2   DCALKLLHNMISCTVCPNVHCYTVIISSL*KENRFDEADDLFDKMSSSNVAPDHVLYLYL 181
           DCAL LL +M S  + P+VH YTV+I++L KENR  E ++L+ KM    V PDHVL+  L
Sbjct: 356 DCALTLLSSMSSFNLTPSVHSYTVLITALYKENRLVEVEELYKKMLDIGVVPDHVLFFTL 415

Query: 182 ENNYPKGQEFNVLLLVSKVLTKHGLNVDLSWLCSSSTFHTEKTFENDIELLFSRILGSTE 361
               PKG E ++ L + + + K+G N+DL  L +S+T    +  E +IE L   I+    
Sbjct: 416 MQKQPKGHELHLALKILQAIAKNGCNLDLCLLSTSATHSPTQDVEQEIECLLGEIVRRNF 475

Query: 362 ISAQ*SFQCFHKCL 403
             A  +F  F   L
Sbjct: 476 ALADVAFGIFISAL 489



 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 31/107 (28%), Positives = 53/107 (49%)
 Frame = +3

Query: 363 FLPNEVFSVFISALSAAGKTNHALNVFNKMIIYGCEPLLSSYNSLIRTLCQEAHVKEAEF 542
           F+   +++  I       K   A+ VF +M+  GC+P   +YN+LI    +     +   
Sbjct: 266 FIDKMMYTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKGWI 325

Query: 543 LVDRMCGQGLVPNLATYLVMINEHCKQGDMWMAFEVLEKMDEKGLSP 683
           L ++M   GL PN+ TY +MI  +C++G +  A  +L  M    L+P
Sbjct: 326 LHNQMSEWGLQPNVVTYHIMIRRYCEEGKVDCALTLLSSMSSFNLTP 372


>emb|CBI24516.3| unnamed protein product [Vitis vinifera]
          Length = 970

 Score =  118 bits (296), Expect = 1e-24
 Identities = 61/118 (51%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
 Frame = +3

Query: 333 CLAESWVALKF-LPNEVFSVFISALSAAGKTNHALNVFNKMIIYGCEPLLSSYNSLIRTL 509
           CL    V   F L +  F +FISAL AAGKT+ AL   +KM+  GC PLLS+YNSLI+ L
Sbjct: 345 CLLGEIVRRNFALADVAFGIFISALCAAGKTDAALLFMDKMVSLGCRPLLSTYNSLIKCL 404

Query: 510 CQEAHVKEAEFLVDRMCGQGLVPNLATYLVMINEHCKQGDMWMAFEVLEKMDEKGLSP 683
            QE  V++A+ L+D M   G+VP+LATYL+M++EHC  GD+  AF +L++M+E+GL P
Sbjct: 405 FQERLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHGDLASAFGLLDQMNERGLKP 462



 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 53/134 (39%), Positives = 76/134 (56%)
 Frame = +2

Query: 2   DCALKLLHNMISCTVCPNVHCYTVIISSL*KENRFDEADDLFDKMSSSNVAPDHVLYLYL 181
           DCAL LL +M S  + P+VH YTV+I++L KENR  E ++L+ KM    V PDHVL+  L
Sbjct: 236 DCALTLLSSMSSFNLTPSVHSYTVLITALYKENRLVEVEELYKKMLDIGVVPDHVLFFTL 295

Query: 182 ENNYPKGQEFNVLLLVSKVLTKHGLNVDLSWLCSSSTFHTEKTFENDIELLFSRILGSTE 361
               PKG E ++ L + + + K+G N+DL  L +S+T    +  E +IE L   I+    
Sbjct: 296 MQKQPKGHELHLALKILQAIAKNGCNLDLCLLSTSATHSPTQDVEQEIECLLGEIVRRNF 355

Query: 362 ISAQ*SFQCFHKCL 403
             A  +F  F   L
Sbjct: 356 ALADVAFGIFISAL 369



 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 31/107 (28%), Positives = 53/107 (49%)
 Frame = +3

Query: 363 FLPNEVFSVFISALSAAGKTNHALNVFNKMIIYGCEPLLSSYNSLIRTLCQEAHVKEAEF 542
           F+   +++  I       K   A+ VF +M+  GC+P   +YN+LI    +     +   
Sbjct: 146 FIDKMMYTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKGWI 205

Query: 543 LVDRMCGQGLVPNLATYLVMINEHCKQGDMWMAFEVLEKMDEKGLSP 683
           L ++M   GL PN+ TY +MI  +C++G +  A  +L  M    L+P
Sbjct: 206 LHNQMSEWGLQPNVVTYHIMIRRYCEEGKVDCALTLLSSMSSFNLTP 252