BLASTX nr result

ID: Coptis24_contig00028703 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028703
         (318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283742.1| PREDICTED: snurportin-1 [Vitis vinifera] gi|...   160   1e-37
ref|XP_003522434.1| PREDICTED: snurportin-1-like [Glycine max]        154   6e-36
ref|XP_003528111.1| PREDICTED: snurportin-1-like [Glycine max]        154   6e-36
ref|XP_002511190.1| conserved hypothetical protein [Ricinus comm...   152   2e-35
ref|XP_002321701.1| predicted protein [Populus trichocarpa] gi|2...   152   3e-35

>ref|XP_002283742.1| PREDICTED: snurportin-1 [Vitis vinifera]
           gi|297734416|emb|CBI15663.3| unnamed protein product
           [Vitis vinifera]
          Length = 419

 Score =  160 bits (404), Expect = 1e-37
 Identities = 75/105 (71%), Positives = 91/105 (86%)
 Frame = +3

Query: 3   SCSQYVLDTDSKGQVPAQQQVVLELQDDGKLTTSDDPPVVFGCLEKELFQKFDLLSGSLL 182
           +CSQYV+DTDSKGQVP+QQQVVLELQDDG LTTSDDPPVVFG L+ +  QK  L SG+LL
Sbjct: 283 NCSQYVIDTDSKGQVPSQQQVVLELQDDGNLTTSDDPPVVFGSLDGDFIQKSGLCSGNLL 342

Query: 183 RFAIGEGGMRFLDGNVEMADLHYLGKVNRGRAFSDNTSKVLFQYT 317
           RFA+ +GG+ F+DG +E ADLHYLGKVNR RAF+D+ SKV+FQ++
Sbjct: 343 RFAVSDGGLSFVDGKLERADLHYLGKVNRARAFADSYSKVMFQHS 387


>ref|XP_003522434.1| PREDICTED: snurportin-1-like [Glycine max]
          Length = 404

 Score =  154 bits (390), Expect = 6e-36
 Identities = 74/105 (70%), Positives = 88/105 (83%)
 Frame = +3

Query: 3   SCSQYVLDTDSKGQVPAQQQVVLELQDDGKLTTSDDPPVVFGCLEKELFQKFDLLSGSLL 182
           +CSQYVLDTDSKGQVP QQQVVLELQDDGKLTTSDDPP+VFGCL+    Q+  L SG LL
Sbjct: 268 NCSQYVLDTDSKGQVPNQQQVVLELQDDGKLTTSDDPPMVFGCLDGSFIQQSGLHSGCLL 327

Query: 183 RFAIGEGGMRFLDGNVEMADLHYLGKVNRGRAFSDNTSKVLFQYT 317
           RF+IGEGG+  +DG ++ ADLHYLGK NR RA +D+ SKV+FQ++
Sbjct: 328 RFSIGEGGLVLMDGKLDKADLHYLGKANRARASADSFSKVMFQHS 372


>ref|XP_003528111.1| PREDICTED: snurportin-1-like [Glycine max]
          Length = 413

 Score =  154 bits (390), Expect = 6e-36
 Identities = 75/105 (71%), Positives = 87/105 (82%)
 Frame = +3

Query: 3   SCSQYVLDTDSKGQVPAQQQVVLELQDDGKLTTSDDPPVVFGCLEKELFQKFDLLSGSLL 182
           +CSQYVLDTDSKGQVP QQQVVLELQ+DGKLTTSDDPPVVFGCL+    Q+  L SG LL
Sbjct: 277 NCSQYVLDTDSKGQVPNQQQVVLELQEDGKLTTSDDPPVVFGCLDGSFIQQSGLHSGCLL 336

Query: 183 RFAIGEGGMRFLDGNVEMADLHYLGKVNRGRAFSDNTSKVLFQYT 317
           RF+IGEGG   +DG +E ADLHYLGK NR RA +D+ SKV+FQ++
Sbjct: 337 RFSIGEGGFVLMDGKLEKADLHYLGKANRARASADSFSKVMFQHS 381


>ref|XP_002511190.1| conserved hypothetical protein [Ricinus communis]
           gi|223550305|gb|EEF51792.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 415

 Score =  152 bits (385), Expect = 2e-35
 Identities = 74/105 (70%), Positives = 88/105 (83%)
 Frame = +3

Query: 3   SCSQYVLDTDSKGQVPAQQQVVLELQDDGKLTTSDDPPVVFGCLEKELFQKFDLLSGSLL 182
           +CSQYV+DTDSKGQVP+QQQVVLELQDDG L +SDDPPVVFGCL+    QK  L SG+L+
Sbjct: 279 NCSQYVIDTDSKGQVPSQQQVVLELQDDGSLISSDDPPVVFGCLDLGFVQKEVLHSGNLV 338

Query: 183 RFAIGEGGMRFLDGNVEMADLHYLGKVNRGRAFSDNTSKVLFQYT 317
           RFAI +GG+RF DG +E ADLHYLGK NR RA +D+ SKV+FQ+T
Sbjct: 339 RFAINDGGLRFADGKLEKADLHYLGKPNRARASADSYSKVVFQHT 383


>ref|XP_002321701.1| predicted protein [Populus trichocarpa] gi|222868697|gb|EEF05828.1|
           predicted protein [Populus trichocarpa]
          Length = 420

 Score =  152 bits (384), Expect = 3e-35
 Identities = 71/105 (67%), Positives = 87/105 (82%)
 Frame = +3

Query: 3   SCSQYVLDTDSKGQVPAQQQVVLELQDDGKLTTSDDPPVVFGCLEKELFQKFDLLSGSLL 182
           +CSQYV+DTD+KG+VP QQQVVLELQDDGKL TSDDPPVVFGCL+ +  QK  L SG+LL
Sbjct: 284 NCSQYVIDTDNKGEVPTQQQVVLELQDDGKLVTSDDPPVVFGCLDSDFIQKSGLCSGNLL 343

Query: 183 RFAIGEGGMRFLDGNVEMADLHYLGKVNRGRAFSDNTSKVLFQYT 317
           RFAI +GG+  +DG +  ADLHYL K NR RAF+D+ SK++FQ+T
Sbjct: 344 RFAISDGGLSSVDGKLVKADLHYLEKPNRARAFADSYSKIMFQHT 388


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