BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028693
         (331 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522011.1| pentatricopeptide repeat-containing protein,...   111   5e-23
ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containi...   108   3e-22
emb|CBI23556.3| unnamed protein product [Vitis vinifera]              108   3e-22
ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containi...    95   5e-18
ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    94   2e-17

>ref|XP_002522011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538815|gb|EEF40415.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 585

 Score =  111 bits (278), Expect = 5e-23
 Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 4/98 (4%)
 Frame = -3

Query: 287 PASPPHFKTHQKFSPLKHRLINELKIGHLDSAFSTLNLMTQ----PDLVSYSLVLKSCIR 120
           P  PP    H     L  RLIN LK GHL  A   L++MTQ    PDL++YSL+LKSCIR
Sbjct: 28  PPPPPPSSAHSDSHSLNTRLINHLKAGHLSKAIIALDVMTQNNTHPDLITYSLLLKSCIR 87

Query: 119 SFNFDRGKLVHSLLIESGLKLDNVVKNSLISLYSKCGD 6
           S NF +GKLVH+ L +SGL+LD+V+ NSLISLYSKCG+
Sbjct: 88  SNNFQKGKLVHNCLTQSGLELDSVILNSLISLYSKCGE 125


>ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  108 bits (271), Expect = 3e-22
 Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 4/86 (4%)
 Frame = -3

Query: 251 FSPLKHRLINELKIGHLDSAFSTLNLMTQ----PDLVSYSLVLKSCIRSFNFDRGKLVHS 84
           F PLK+RLI +L +G L  AFSTL+LMTQ    PDL +YS++LKSCIR  NF  GKLVH 
Sbjct: 40  FEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHR 99

Query: 83  LLIESGLKLDNVVKNSLISLYSKCGD 6
            L++SGL+LD+VV N+LISLYSKCGD
Sbjct: 100 KLMQSGLELDSVVLNTLISLYSKCGD 125


>emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  108 bits (271), Expect = 3e-22
 Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 4/86 (4%)
 Frame = -3

Query: 251 FSPLKHRLINELKIGHLDSAFSTLNLMTQ----PDLVSYSLVLKSCIRSFNFDRGKLVHS 84
           F PLK+RLI +L +G L  AFSTL+LMTQ    PDL +YS++LKSCIR  NF  GKLVH 
Sbjct: 9   FEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHR 68

Query: 83  LLIESGLKLDNVVKNSLISLYSKCGD 6
            L++SGL+LD+VV N+LISLYSKCGD
Sbjct: 69  KLMQSGLELDSVVLNTLISLYSKCGD 94


>ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 49/76 (64%), Positives = 60/76 (78%), Gaps = 4/76 (5%)
 Frame = -3

Query: 221 ELKIGHLDSAFSTLNLMTQ----PDLVSYSLVLKSCIRSFNFDRGKLVHSLLIESGLKLD 54
           +L +G L  AFSTL+LMTQ    PDL +YS++LKSCIR  NF  GKLVH  L++SGL+LD
Sbjct: 1   QLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELD 60

Query: 53  NVVKNSLISLYSKCGD 6
           +VV N+LISLYSKCGD
Sbjct: 61  SVVLNTLISLYSKCGD 76


>ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 53/101 (52%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
 Frame = -3

Query: 293 SIPASPPHFKTHQKFSPLKHRLINELKIGHLDSAFSTLNLM----TQPDLVSYSLVLKSC 126
           S P+S   F T    +PL  RLI E+  G L  A STL  M    + PDL +YSL LK C
Sbjct: 17  SNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKC 76

Query: 125 IRSFNFDRGKLVHSLLIESGLKLDNVVKNSLISLYSKCGDW 3
           IR+ +FD G LVH  L +S L+LD+V  NSLISLYSKCG W
Sbjct: 77  IRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQW 117