BLASTX nr result

ID: Coptis24_contig00028619 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028619
         (346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002312133.1| predicted protein [Populus trichocarpa] gi|2...    66   3e-09
ref|XP_002530400.1| conserved hypothetical protein [Ricinus comm...    57   2e-06
ref|XP_003600816.1| hypothetical protein MTR_3g069720 [Medicago ...    57   2e-06
ref|XP_002276362.1| PREDICTED: uncharacterized protein LOC100263...    56   3e-06
emb|CAN65630.1| hypothetical protein VITISV_019369 [Vitis vinifera]    56   3e-06

>ref|XP_002312133.1| predicted protein [Populus trichocarpa] gi|222851953|gb|EEE89500.1|
           predicted protein [Populus trichocarpa]
          Length = 428

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 31/42 (73%), Positives = 36/42 (85%), Gaps = 2/42 (4%)
 Frame = +2

Query: 11  VDFNIKGLSMDCFLPPGDLKKEQEGYDSV--ATNARLPFRTR 130
           VDFNIKGLSMDCFLPP D+KKE+EG D+V  + NARLPF+ R
Sbjct: 357 VDFNIKGLSMDCFLPPSDIKKEEEGCDNVVISNNARLPFKIR 398


>ref|XP_002530400.1| conserved hypothetical protein [Ricinus communis]
           gi|223530049|gb|EEF31970.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 425

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +2

Query: 11  VDFNIKGLSMDCFLPPGDLKKEQEGYDSVATNARLPFRTR 130
           VDFNIKGLSMDCFLPP DLKK+ E    V  NA+LP + R
Sbjct: 356 VDFNIKGLSMDCFLPPSDLKKDGEESYVVTGNAKLPLKMR 395


>ref|XP_003600816.1| hypothetical protein MTR_3g069720 [Medicago truncatula]
           gi|355489864|gb|AES71067.1| hypothetical protein
           MTR_3g069720 [Medicago truncatula]
          Length = 489

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 28/46 (60%), Positives = 33/46 (71%), Gaps = 6/46 (13%)
 Frame = +2

Query: 11  VDFNIKGLSMDCFLPPGDLKKEQE------GYDSVATNARLPFRTR 130
           VDFNIKGLS+DCFLPP DLK+EQE      G     TNA+LP++ R
Sbjct: 415 VDFNIKGLSIDCFLPPSDLKREQEETGQCGGGVVTGTNAKLPYKIR 460


>ref|XP_002276362.1| PREDICTED: uncharacterized protein LOC100263234 [Vitis vinifera]
           gi|296086114|emb|CBI31555.3| unnamed protein product
           [Vitis vinifera]
          Length = 426

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/40 (70%), Positives = 33/40 (82%), Gaps = 2/40 (5%)
 Frame = +2

Query: 11  VDFNIKGLSMDCFLPPGDLKK-EQEGYD-SVATNARLPFR 124
           VDFNIKGLS DCFLPPGDLKK ++EG D  V +N +LPF+
Sbjct: 355 VDFNIKGLSTDCFLPPGDLKKVDEEGCDVVVGSNTKLPFK 394


>emb|CAN65630.1| hypothetical protein VITISV_019369 [Vitis vinifera]
          Length = 426

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/40 (70%), Positives = 33/40 (82%), Gaps = 2/40 (5%)
 Frame = +2

Query: 11  VDFNIKGLSMDCFLPPGDLKK-EQEGYD-SVATNARLPFR 124
           VDFNIKGLS DCFLPPGDLKK ++EG D  V +N +LPF+
Sbjct: 355 VDFNIKGLSXDCFLPPGDLKKVDEEGCDVVVGSNTKLPFK 394


Top