BLASTX nr result

ID: Coptis24_contig00028618 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028618
         (347 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323541.1| predicted protein [Populus trichocarpa] gi|2...    58   9e-07

>ref|XP_002323541.1| predicted protein [Populus trichocarpa] gi|222868171|gb|EEF05302.1|
           predicted protein [Populus trichocarpa]
          Length = 426

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 40/114 (35%), Positives = 59/114 (51%)
 Frame = +1

Query: 1   SQLKHLSLRSSVLMPSSDLSNTFNSLKTLVLDGILVDQSAFDNILSGGKNLQSLRIKNCT 180
           S LKHL L S  L  S   ++  N L+TL LDG+ +DQS  D I S    L  LR+  C 
Sbjct: 138 SHLKHLCLVSCTLRLSPKFTSQLNPLRTLDLDGVPLDQSGLDIITSACPKLTLLRMIGCG 197

Query: 181 LPESFFICRKFPSLKSLVLEECQRAYNIQISCIDLITFVYVGMVVKNLRFVGAP 342
           LP+   I  +   LK+L++ +     ++++  I+L  F + G   + L FV  P
Sbjct: 198 LPKIVCIHGQLLCLKTLIIHD--SLISVELKSINLEIFEFFGH-PRKLTFVDVP 248


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