BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028486
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511542.1| pentatricopeptide repeat-containing protein,...   165   4e-39
ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33
gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indi...   116   2e-24
ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group] g...   116   2e-24
dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]    111   7e-23

>ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550657|gb|EEF52144.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 434

 Score =  165 bits (417), Expect = 4e-39
 Identities = 78/112 (69%), Positives = 94/112 (83%)
 Frame = -1

Query: 338 AEELFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICAK 159
           A  LF+ M+E ++V+WN MISCY HNGDL+ GLK F+RMQ +   PNEITLVTLLSICAK
Sbjct: 181 ARRLFDSMTERTVVSWNAMISCYAHNGDLNEGLKTFERMQAEDISPNEITLVTLLSICAK 240

Query: 158 LGDLEKGLGVIRFIEDNHFCRNMIVSTAILEMYVKCGAVDEARQEFDQMTRR 3
           LGDLE GL + ++IEDN+ C NMIVSTAILEMYVKCGAVD+AR+EFD+M +R
Sbjct: 241 LGDLEMGLRIKKYIEDNNLCVNMIVSTAILEMYVKCGAVDDARKEFDRMGQR 292



 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 39/112 (34%), Positives = 71/112 (63%)
 Frame = -1

Query: 338 AEELFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICAK 159
           A + F+ M +  IV W+ MI+ Y  NG  +  L++F+ M+ +K +PN++TLV++LS C +
Sbjct: 282 ARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMRREKVKPNDVTLVSVLSACVQ 341

Query: 158 LGDLEKGLGVIRFIEDNHFCRNMIVSTAILEMYVKCGAVDEARQEFDQMTRR 3
           LG +E G  +  ++E      N+ V++A++ MY KCG + +AR+ F +  ++
Sbjct: 342 LGSVEMGNYIGSYVESQDLASNVYVASALVGMYSKCGNISKAREVFGKTPQK 393


>ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  145 bits (366), Expect = 3e-33
 Identities = 69/112 (61%), Positives = 85/112 (75%)
 Frame = -1

Query: 338 AEELFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICAK 159
           A ELF++M + SIV+WN MISCY  NGD H G  +F+RMQ++ C PNEITL T+LSICAK
Sbjct: 181 ARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAK 240

Query: 158 LGDLEKGLGVIRFIEDNHFCRNMIVSTAILEMYVKCGAVDEARQEFDQMTRR 3
           LGDLE GL + +  ++ +   NMIVSTA+LEMYVKCGAVD+ R  FD M RR
Sbjct: 241 LGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARR 292



 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 42/109 (38%), Positives = 73/109 (66%)
 Frame = -1

Query: 329 LFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICAKLGD 150
           +F+ M+   +VTW+ MI+ Y  NG  +  L++F+ M+  + +PN++TLV++LS CA+LG 
Sbjct: 285 VFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGS 344

Query: 149 LEKGLGVIRFIEDNHFCRNMIVSTAILEMYVKCGAVDEARQEFDQMTRR 3
           +E G  +  ++E      N+ V++A+L MY KCG + +ARQ FD++ +R
Sbjct: 345 VETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQR 393



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
 Frame = -1

Query: 341 KAEELFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICA 162
           KA ++F+++ +   VTWN+MI     NG     + ++ RM+E + +PN IT V L++ C 
Sbjct: 382 KARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACT 441

Query: 161 KLGDLEKGLGVIRFIEDNH-FCRNMIVSTAILEMYVKCGAVDEA 33
             G +E GL   R +  +H    N+     I++++ + G + +A
Sbjct: 442 HAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDA 485


>gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  116 bits (291), Expect = 2e-24
 Identities = 56/113 (49%), Positives = 76/113 (67%)
 Frame = -1

Query: 341 KAEELFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICA 162
           KA  LF+ M   +  +WN+MI+CY H G+    L++F+RM  +  RPN IT+ T+ SICA
Sbjct: 169 KARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICA 228

Query: 161 KLGDLEKGLGVIRFIEDNHFCRNMIVSTAILEMYVKCGAVDEARQEFDQMTRR 3
           K GDLE G      I +    +NMIV TA++EMYVKC A+DEAR+EFD+M +R
Sbjct: 229 KTGDLETGKWARSLIAEQDL-QNMIVHTALMEMYVKCQAIDEARREFDRMQQR 280



 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 43/113 (38%), Positives = 68/113 (60%)
 Frame = -1

Query: 341 KAEELFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICA 162
           +A   F+ M +  +V W+TMI+ Y  NG  H  L++F+RM+   C+PNE+TLV +LS CA
Sbjct: 269 EARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACA 328

Query: 161 KLGDLEKGLGVIRFIEDNHFCRNMIVSTAILEMYVKCGAVDEARQEFDQMTRR 3
           +LG  E G  +   +E  +      + +A+++MY KCG V  AR  F++M  +
Sbjct: 329 QLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHK 381



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
 Frame = -1

Query: 341 KAEELFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICA 162
           +A  +FN M    ++TWN+M+     NG     + ++K M E+  +PNEIT V LL+ C 
Sbjct: 370 RARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACT 429

Query: 161 KLGDLEKGLGVIRFIEDNHFCRNMIVSTA-ILEMYVKCGAVDEA 33
             G +++G+   + ++  H     +   A I+++  K G + EA
Sbjct: 430 HAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREA 473


>ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
           gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR)
           repeat-containing protein-like [Oryza sativa Japonica
           Group] gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza
           sativa Japonica Group] gi|125571815|gb|EAZ13330.1|
           hypothetical protein OsJ_03251 [Oryza sativa Japonica
           Group]
          Length = 608

 Score =  116 bits (291), Expect = 2e-24
 Identities = 56/113 (49%), Positives = 76/113 (67%)
 Frame = -1

Query: 341 KAEELFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICA 162
           KA  LF+ M   +  +WN+MI+CY H G+    L++F+RM  +  RPN IT+ T+ SICA
Sbjct: 169 KARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICA 228

Query: 161 KLGDLEKGLGVIRFIEDNHFCRNMIVSTAILEMYVKCGAVDEARQEFDQMTRR 3
           K GDLE G      I +    +NMIV TA++EMYVKC A+DEAR+EFD+M +R
Sbjct: 229 KTGDLETGKWARSLIAEQDL-QNMIVHTALMEMYVKCRAIDEARREFDRMQQR 280



 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 43/113 (38%), Positives = 68/113 (60%)
 Frame = -1

Query: 341 KAEELFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICA 162
           +A   F+ M +  +V W+TMI+ Y  NG  H  L++F+RM+   C+PNE+TLV +LS CA
Sbjct: 269 EARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACA 328

Query: 161 KLGDLEKGLGVIRFIEDNHFCRNMIVSTAILEMYVKCGAVDEARQEFDQMTRR 3
           +LG  E G  +   +E  +      + +A+++MY KCG V  AR  F++M  +
Sbjct: 329 QLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHK 381



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
 Frame = -1

Query: 341 KAEELFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICA 162
           +A  +FN M    ++TWN+M+     NG     + ++K M E+  +PNEIT V LL+ C 
Sbjct: 370 RARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACT 429

Query: 161 KLGDLEKGLGVIRFIEDNHFCRNMIVSTA-ILEMYVKCGAVDEA 33
             G +++G+   + ++  H     +   A I+++  K G + EA
Sbjct: 430 HAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREA 473


>dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  111 bits (277), Expect = 7e-23
 Identities = 53/113 (46%), Positives = 77/113 (68%)
 Frame = -1

Query: 341 KAEELFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICA 162
           KA  LF+ M   +  +WN+MI+CY H G+    L +F RM  +  RPN IT+ ++ SICA
Sbjct: 203 KARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICA 262

Query: 161 KLGDLEKGLGVIRFIEDNHFCRNMIVSTAILEMYVKCGAVDEARQEFDQMTRR 3
           K GDL+ G  V   I ++   +N+IV TA++EMYVKC A+D+AR+EFD+M++R
Sbjct: 263 KSGDLDTGKRVRDLIGEDDL-QNVIVHTALMEMYVKCRAIDDARREFDRMSQR 314



 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 41/112 (36%), Positives = 66/112 (58%)
 Frame = -1

Query: 338 AEELFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICAK 159
           A   F+ MS+  +V W+TMI+ Y  NG     L++F+RM+   CRPNE+TLV ++S CA+
Sbjct: 304 ARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQ 363

Query: 158 LGDLEKGLGVIRFIEDNHFCRNMIVSTAILEMYVKCGAVDEARQEFDQMTRR 3
           LG  E    +  + E+        + +A+++MY +CG V  AR  F +M ++
Sbjct: 364 LGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQK 415



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
 Frame = -1

Query: 341 KAEELFNEMSETSIVTWNTMISCYLHNGDLHAGLKVFKRMQEDKCRPNEITLVTLLSICA 162
           +A  +F+ M +  ++TWN+MI     NG     + ++++M E+  +PNEIT V LL+ C 
Sbjct: 404 RARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACT 463

Query: 161 KLGDLEKGLGVIRFIEDNHFCRNMIVSTA-ILEMYVKCGAVDEA 33
             G +++G+     ++  H     +   A I+++  K G + EA
Sbjct: 464 HAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEA 507