BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028485
         (489 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containi...   159   2e-37
ref|XP_002511542.1| pentatricopeptide repeat-containing protein,...   150   1e-34
emb|CBI38781.3| unnamed protein product [Vitis vinifera]               91   8e-17
ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containi...    91   8e-17
dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]     90   2e-16

>ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  159 bits (402), Expect = 2e-37
 Identities = 77/142 (54%), Positives = 101/142 (71%)
 Frame = +2

Query: 62  LIITKHVNLTPLFLKKLLNPPIINYARKVFDHIADPDSFLYVSMISTYSKLYLNHEAIQT 241
           LII K+++LTPLF+++LLN   I YAR+VFD I  PD  ++ S I+ YS+L LN+EA++T
Sbjct: 24  LIIIKYLSLTPLFIRRLLNASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRT 83

Query: 242 FFSMHGNKVGFTCFAFPPVFKSCALLLKSKEGRQVHCVVIKNGFGCYMYVQSGLIDFYAK 421
           F SMH N V   CF  PP+FKSCA LL    G+QVH +VI+ GF   ++ Q+ LI+FYAK
Sbjct: 84  FVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAK 143

Query: 422 SGDLDSANRVFDGILVKDVVCY 487
             DL SA  +FDGILVKD + Y
Sbjct: 144 INDLGSAELIFDGILVKDTIAY 165



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 33/120 (27%), Positives = 62/120 (51%)
 Frame = +2

Query: 128 INYARKVFDHIADPDSFLYVSMISTYSKLYLNHEAIQTFFSMHGNKVGFTCFAFPPVFKS 307
           ++  R VFDH+A  D   + +MI+ Y++   ++EA++ F +M   ++         V  +
Sbjct: 279 VDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSA 338

Query: 308 CALLLKSKEGRQVHCVVIKNGFGCYMYVQSGLIDFYAKSGDLDSANRVFDGILVKDVVCY 487
           CA L   + G ++   V   G    +YV S L+  Y+K G++  A ++FD +  +D V +
Sbjct: 339 CAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTW 398


>ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550657|gb|EEF52144.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 434

 Score =  150 bits (379), Expect = 1e-34
 Identities = 72/143 (50%), Positives = 101/143 (70%)
 Frame = +2

Query: 59  TLIITKHVNLTPLFLKKLLNPPIINYARKVFDHIADPDSFLYVSMISTYSKLYLNHEAIQ 238
           +LII KH +L  + ++KLLN   I+YAR++FD +  P   LY S+ISTYSKL L+ +A++
Sbjct: 23  SLIIIKHPSLATVLVRKLLNLSDIDYARQLFDQVPQPGQILYNSLISTYSKLSLHKDALK 82

Query: 239 TFFSMHGNKVGFTCFAFPPVFKSCALLLKSKEGRQVHCVVIKNGFGCYMYVQSGLIDFYA 418
           TFFSMH +    +CF  PPV K+C+ LL    G+QVH +++  G  C +YVQ+ L+DFYA
Sbjct: 83  TFFSMHHSDTRLSCFTGPPVIKACSSLLAIDVGKQVHSLIVICGIDCNVYVQTSLMDFYA 142

Query: 419 KSGDLDSANRVFDGILVKDVVCY 487
           K G+L SA ++FDGILVKD + Y
Sbjct: 143 KIGELGSARKIFDGILVKDPISY 165


>emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
 Frame = +2

Query: 62  LIITKHVNLTPLFLKKLLN------PPIINYARKVFDHIADPDSFLYVSMISTYSKLYLN 223
           L++  H+   PLF  KL++         +NYARK+F  + +PD F+  +MI  Y++    
Sbjct: 33  LLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNP 92

Query: 224 HEAIQTFFSMHGNKVGFTCFAFPPVFKSCALLLKSKEGRQVHCVVIKNGFGCYMYVQSGL 403
           +EA+  ++ M    V    + +P V  +CA L   K GR+ HC V+KNGFG  ++V + L
Sbjct: 93  YEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINAL 152

Query: 404 IDFYAKSGDLDSANRVFDGILVKDVVCY 487
           I FY   G    A  VFD   V+DVV +
Sbjct: 153 IQFYHNCGSFGCACDVFDESTVRDVVTW 180


>ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
 Frame = +2

Query: 62  LIITKHVNLTPLFLKKLLN------PPIINYARKVFDHIADPDSFLYVSMISTYSKLYLN 223
           L++  H+   PLF  KL++         +NYARK+F  + +PD F+  +MI  Y++    
Sbjct: 33  LLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNP 92

Query: 224 HEAIQTFFSMHGNKVGFTCFAFPPVFKSCALLLKSKEGRQVHCVVIKNGFGCYMYVQSGL 403
           +EA+  ++ M    V    + +P V  +CA L   K GR+ HC V+KNGFG  ++V + L
Sbjct: 93  YEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINAL 152

Query: 404 IDFYAKSGDLDSANRVFDGILVKDVVCY 487
           I FY   G    A  VFD   V+DVV +
Sbjct: 153 IQFYHNCGSFGCACDVFDESTVRDVVTW 180



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 35/117 (29%), Positives = 60/117 (51%)
 Frame = +2

Query: 128 INYARKVFDHIADPDSFLYVSMISTYSKLYLNHEAIQTFFSMHGNKVGFTCFAFPPVFKS 307
           I  A++VF+ I + D   + SM+S  +K     EA+  F  M  NK+         V  +
Sbjct: 264 IESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSA 323

Query: 308 CALLLKSKEGRQVHCVVIKNGFGCYMYVQSGLIDFYAKSGDLDSANRVFDGILVKDV 478
           CA      +G+ +H ++ K    C + +++ L+D YAK G +D A +VF  + V++V
Sbjct: 324 CAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNV 380


>dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 48/115 (41%), Positives = 68/115 (59%)
 Frame = +2

Query: 137 ARKVFDHIADPDSFLYVSMISTYSKLYLNHEAIQTFFSMHGNKVGFTCFAFPPVFKSCAL 316
           AR +FD +  P   L  + +S+ S+   +H+ +QTF SMH           P VFKSCAL
Sbjct: 72  ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 131

Query: 317 LLKSKEGRQVHCVVIKNGFGCYMYVQSGLIDFYAKSGDLDSANRVFDGILVKDVV 481
              S +GRQVHC  +  G    ++V + L+DFYAK+GD++SA  VFD + VKD +
Sbjct: 132 TASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPI 186