BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028317
         (436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24922.3| unnamed protein product [Vitis vinifera]              204   5e-51
ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis v...   204   5e-51
ref|NP_189031.1| DNA topoisomerase 2 [Arabidopsis thaliana] gi|1...   202   2e-50
ref|NP_001118686.1| DNA topoisomerase 2 [Arabidopsis thaliana] g...   202   2e-50
ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arab...   200   9e-50

>emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score =  204 bits (520), Expect = 5e-51
 Identities = 102/144 (70%), Positives = 116/144 (80%), Gaps = 1/144 (0%)
 Frame = +2

Query: 5   DKLPRVMEKVNDRWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANHXXXXXXX 184
           + LPR+ EKVN+RWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIAN        
Sbjct: 281 ESLPRIAEKVNERWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANFVMSIVNK 340

Query: 185 XXXXXXX-AHTVKSHMWIFVNALIDNPAFDSQTKETLTIRQTSFGSKCDLSTKFLNKVAT 361
                   AHTVK+H+W+FVNALIDNPAFDSQTKETLTIRQ+SFGSKC+LS +FL KV+ 
Sbjct: 341 KNKNANIKAHTVKNHLWVFVNALIDNPAFDSQTKETLTIRQSSFGSKCELSQEFLKKVSK 400

Query: 362 SGLEALVKDWADAKRAKDLKRTDG 433
           SG+   +  WAD K+ KDLK+TDG
Sbjct: 401 SGVVESLLSWADYKQNKDLKKTDG 424


>ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis vinifera]
          Length = 1489

 Score =  204 bits (520), Expect = 5e-51
 Identities = 102/144 (70%), Positives = 116/144 (80%), Gaps = 1/144 (0%)
 Frame = +2

Query: 5   DKLPRVMEKVNDRWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANHXXXXXXX 184
           + LPR+ EKVN+RWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIAN        
Sbjct: 281 ESLPRIAEKVNERWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANFVMSIVNK 340

Query: 185 XXXXXXX-AHTVKSHMWIFVNALIDNPAFDSQTKETLTIRQTSFGSKCDLSTKFLNKVAT 361
                   AHTVK+H+W+FVNALIDNPAFDSQTKETLTIRQ+SFGSKC+LS +FL KV+ 
Sbjct: 341 KNKNANIKAHTVKNHLWVFVNALIDNPAFDSQTKETLTIRQSSFGSKCELSQEFLKKVSK 400

Query: 362 SGLEALVKDWADAKRAKDLKRTDG 433
           SG+   +  WAD K+ KDLK+TDG
Sbjct: 401 SGVVESLLSWADYKQNKDLKKTDG 424


>ref|NP_189031.1| DNA topoisomerase 2 [Arabidopsis thaliana]
           gi|1174740|sp|P30182.2|TOP2_ARATH RecName: Full=DNA
           topoisomerase 2; AltName: Full=DNA topoisomerase II
           gi|474890|gb|AAA65448.1| topoisomerase II [Arabidopsis
           thaliana] gi|9294657|dbj|BAB03006.1| DNA topoisomerase
           II [Arabidopsis thaliana] gi|332643305|gb|AEE76826.1|
           DNA topoisomerase 2 [Arabidopsis thaliana]
          Length = 1473

 Score =  202 bits (514), Expect = 2e-50
 Identities = 100/145 (68%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
 Frame = +2

Query: 2   EDKLPRVMEKVNDRWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANHXXXXXX 181
           ED LPR+ EKVNDRWE+CVSLSEGQFQQVSFVNSIATIKGGTHVDYVT+QI NH      
Sbjct: 286 EDPLPRLTEKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHIVAAVN 345

Query: 182 XXXXXXXX-AHTVKSHMWIFVNALIDNPAFDSQTKETLTIRQTSFGSKCDLSTKFLNKVA 358
                    AH VK+H+W+FVNALIDNPAFDSQTKETLT+RQ+SFGSKC+LS  FL KV 
Sbjct: 346 KKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVG 405

Query: 359 TSGLEALVKDWADAKRAKDLKRTDG 433
            SG+   +  WAD K+ KDLK++DG
Sbjct: 406 KSGVVENLLSWADFKQNKDLKKSDG 430


>ref|NP_001118686.1| DNA topoisomerase 2 [Arabidopsis thaliana]
           gi|332643306|gb|AEE76827.1| DNA topoisomerase 2
           [Arabidopsis thaliana]
          Length = 1438

 Score =  202 bits (514), Expect = 2e-50
 Identities = 100/145 (68%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
 Frame = +2

Query: 2   EDKLPRVMEKVNDRWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANHXXXXXX 181
           ED LPR+ EKVNDRWE+CVSLSEGQFQQVSFVNSIATIKGGTHVDYVT+QI NH      
Sbjct: 286 EDPLPRLTEKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHIVAAVN 345

Query: 182 XXXXXXXX-AHTVKSHMWIFVNALIDNPAFDSQTKETLTIRQTSFGSKCDLSTKFLNKVA 358
                    AH VK+H+W+FVNALIDNPAFDSQTKETLT+RQ+SFGSKC+LS  FL KV 
Sbjct: 346 KKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVG 405

Query: 359 TSGLEALVKDWADAKRAKDLKRTDG 433
            SG+   +  WAD K+ KDLK++DG
Sbjct: 406 KSGVVENLLSWADFKQNKDLKKSDG 430


>ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
           lyrata] gi|297329310|gb|EFH59729.1| hypothetical protein
           ARALYDRAFT_898932 [Arabidopsis lyrata subsp. lyrata]
          Length = 1432

 Score =  200 bits (509), Expect = 9e-50
 Identities = 98/144 (68%), Positives = 114/144 (79%), Gaps = 1/144 (0%)
 Frame = +2

Query: 5   DKLPRVMEKVNDRWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANHXXXXXXX 184
           D LPR+ EKVNDRWE+CVSLSEGQFQQVSFVNSIATIKGGTHVDYVT+QI N+       
Sbjct: 285 DPLPRITEKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNYIVGVVNK 344

Query: 185 XXXXXXX-AHTVKSHMWIFVNALIDNPAFDSQTKETLTIRQTSFGSKCDLSTKFLNKVAT 361
                   AH VK+H+W+FVNALIDNPAFDSQTKETLT+RQ+SFGSKC+LS  FL KV  
Sbjct: 345 KNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVGK 404

Query: 362 SGLEALVKDWADAKRAKDLKRTDG 433
           SG+   +  WAD K++KDLK++DG
Sbjct: 405 SGVVENLLSWADFKKSKDLKKSDG 428