BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028308
         (814 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279399.2| PREDICTED: pentatricopeptide repeat-containi...   375   e-102
emb|CBI26594.3| unnamed protein product [Vitis vinifera]              375   e-102
emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]   369   e-100
ref|XP_002307578.1| predicted protein [Populus trichocarpa] gi|2...   341   1e-91
ref|XP_002520753.1| pentatricopeptide repeat-containing protein,...   337   2e-90

>ref|XP_002279399.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
            mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  375 bits (963), Expect = e-102
 Identities = 183/263 (69%), Positives = 217/263 (82%)
 Frame = -3

Query: 812  VTYSTLTSLYIKNSLFDKARSTLKEMEKRASRKARVAYSSLISLHTNMDDKDGVHRIWKK 633
            VTYS+LT+LYIK  L DKA +TL EMEKR SRK R+AYSSLISLHTNM DKDGVHRIWKK
Sbjct: 375  VTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHTNMQDKDGVHRIWKK 434

Query: 632  MNSIFSKMNDAEYTCMISSLVXXXXXXXXXKVYSEWETVSTTGDSRLSNLLLAAYINNDD 453
            + SIF KMNDAEYTCMISSLV          +YSEW +VS TGDSR+ N+LLAAYIN ++
Sbjct: 435  LKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSRVPNILLAAYINKNE 494

Query: 452  MEKAESFYGRMVQKGIRPSYTTWELLTWGFLKLKQMDKVLHYFQKAIESVGKWEPDDRII 273
            ME AE FY +MV++GI PSYTTWELLTWG+LK KQM+KVL YF+KA+ SV KW PD++++
Sbjct: 495  MEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYFEKAVGSVKKWNPDEKLV 554

Query: 272  REVFHNLSKQRDVEGAEKLLVILREAGHVTTEIYNALLRTYEKAGKMPLIVAERMKKDTV 93
            REV+ NL +Q ++EGAEK+LVILR+AGHV+TEIYN LLR Y KAGKMPLIVAE MKKD V
Sbjct: 555  REVYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLRAYAKAGKMPLIVAEWMKKDKV 614

Query: 92   DLNEETQELIKLTSKFCVADASS 24
            +++EET  LIK TSK CV++ SS
Sbjct: 615  EMDEETHRLIKETSKMCVSEVSS 637


>emb|CBI26594.3| unnamed protein product [Vitis vinifera]
          Length = 529

 Score =  375 bits (963), Expect = e-102
 Identities = 183/263 (69%), Positives = 217/263 (82%)
 Frame = -3

Query: 812  VTYSTLTSLYIKNSLFDKARSTLKEMEKRASRKARVAYSSLISLHTNMDDKDGVHRIWKK 633
            VTYS+LT+LYIK  L DKA +TL EMEKR SRK R+AYSSLISLHTNM DKDGVHRIWKK
Sbjct: 262  VTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHTNMQDKDGVHRIWKK 321

Query: 632  MNSIFSKMNDAEYTCMISSLVXXXXXXXXXKVYSEWETVSTTGDSRLSNLLLAAYINNDD 453
            + SIF KMNDAEYTCMISSLV          +YSEW +VS TGDSR+ N+LLAAYIN ++
Sbjct: 322  LKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSRVPNILLAAYINKNE 381

Query: 452  MEKAESFYGRMVQKGIRPSYTTWELLTWGFLKLKQMDKVLHYFQKAIESVGKWEPDDRII 273
            ME AE FY +MV++GI PSYTTWELLTWG+LK KQM+KVL YF+KA+ SV KW PD++++
Sbjct: 382  MEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYFEKAVGSVKKWNPDEKLV 441

Query: 272  REVFHNLSKQRDVEGAEKLLVILREAGHVTTEIYNALLRTYEKAGKMPLIVAERMKKDTV 93
            REV+ NL +Q ++EGAEK+LVILR+AGHV+TEIYN LLR Y KAGKMPLIVAE MKKD V
Sbjct: 442  REVYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLRAYAKAGKMPLIVAEWMKKDKV 501

Query: 92   DLNEETQELIKLTSKFCVADASS 24
            +++EET  LIK TSK CV++ SS
Sbjct: 502  EMDEETHRLIKETSKMCVSEVSS 524


>emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
          Length = 1111

 Score =  369 bits (948), Expect = e-100
 Identities = 180/257 (70%), Positives = 212/257 (82%)
 Frame = -3

Query: 812  VTYSTLTSLYIKNSLFDKARSTLKEMEKRASRKARVAYSSLISLHTNMDDKDGVHRIWKK 633
            VTYS+LT+LYIK  L DKA +TL EMEKR SRK R+AYSSLISLHTNM DKDGVHRIWKK
Sbjct: 262  VTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHTNMQDKDGVHRIWKK 321

Query: 632  MNSIFSKMNDAEYTCMISSLVXXXXXXXXXKVYSEWETVSTTGDSRLSNLLLAAYINNDD 453
            + SIF KMNDAEYTCMISSLV          +YSEW +VS TGDSR+ N+LLAAYIN ++
Sbjct: 322  LKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSRVPNILLAAYINKNE 381

Query: 452  MEKAESFYGRMVQKGIRPSYTTWELLTWGFLKLKQMDKVLHYFQKAIESVGKWEPDDRII 273
            ME AE FY +MV++GI PSYTTWELLTWG+LK KQM+KVL YF+KA+ SV KW PD++++
Sbjct: 382  MEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYFEKAVGSVKKWNPDEKLV 441

Query: 272  REVFHNLSKQRDVEGAEKLLVILREAGHVTTEIYNALLRTYEKAGKMPLIVAERMKKDTV 93
            REV+ NL +Q ++EGAEK+LVILR+AGHV+TEIYN LLR Y KAGKMPLIVAE MKKD V
Sbjct: 442  REVYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLRAYAKAGKMPLIVAEWMKKDKV 501

Query: 92   DLNEETQELIKLTSKFC 42
            +++EET  LIK TSK C
Sbjct: 502  EMDEETHRLIKETSKMC 518


>ref|XP_002307578.1| predicted protein [Populus trichocarpa] gi|222857027|gb|EEE94574.1|
            predicted protein [Populus trichocarpa]
          Length = 513

 Score =  341 bits (874), Expect = 1e-91
 Identities = 168/264 (63%), Positives = 209/264 (79%)
 Frame = -3

Query: 812  VTYSTLTSLYIKNSLFDKARSTLKEMEKRASRKARVAYSSLISLHTNMDDKDGVHRIWKK 633
            VTYSTLT+LYIK    +KA  TLKE+EKRAS+K RV YSSL+SLH NM DKDG+HR W K
Sbjct: 246  VTYSTLTNLYIKKECLEKAAYTLKEVEKRASKKNRVTYSSLLSLHANMKDKDGLHRTWNK 305

Query: 632  MNSIFSKMNDAEYTCMISSLVXXXXXXXXXKVYSEWETVSTTGDSRLSNLLLAAYINNDD 453
            M S+F+KMNDAEY CMISSLV          +Y+EWE+VS T DSR+SN++LA+YIN + 
Sbjct: 306  MKSVFNKMNDAEYNCMISSLVKLGEFGGAENLYNEWESVSATRDSRVSNIVLASYINRNQ 365

Query: 452  MEKAESFYGRMVQKGIRPSYTTWELLTWGFLKLKQMDKVLHYFQKAIESVGKWEPDDRII 273
            ME AE+F  RMVQKGI P YTTWELLT G LK +QM+KVL  F+KA+ SV KW PD R+I
Sbjct: 366  MEDAENFCQRMVQKGITPCYTTWELLTCGHLKTEQMEKVLENFKKALCSVRKWTPDKRLI 425

Query: 272  REVFHNLSKQRDVEGAEKLLVILREAGHVTTEIYNALLRTYEKAGKMPLIVAERMKKDTV 93
             ++F NL ++ D+EGAEKLLVILR+AGHV+T IYN+LLRTY KAGKMP+I+ ERM+KD V
Sbjct: 426  GDIFKNLEERGDIEGAEKLLVILRDAGHVSTMIYNSLLRTYAKAGKMPVIIEERMQKDNV 485

Query: 92   DLNEETQELIKLTSKFCVADASSV 21
            +L++ET +LI+ TS  CV++ SS+
Sbjct: 486  ELDDETHKLIQTTSTMCVSEVSSL 509


>ref|XP_002520753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223540138|gb|EEF41715.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 551

 Score =  337 bits (864), Expect = 2e-90
 Identities = 166/254 (65%), Positives = 203/254 (79%)
 Frame = -3

Query: 812  VTYSTLTSLYIKNSLFDKARSTLKEMEKRASRKARVAYSSLISLHTNMDDKDGVHRIWKK 633
            +TYSTLT+LY+KN L + A STLKEMEKRASRK R+AYSSL+SL+TNM DKD VHRIW K
Sbjct: 242  ITYSTLTNLYLKNKLLEDAVSTLKEMEKRASRKNRLAYSSLLSLYTNMGDKDAVHRIWNK 301

Query: 632  MNSIFSKMNDAEYTCMISSLVXXXXXXXXXKVYSEWETVSTTGDSRLSNLLLAAYINNDD 453
            M S+F KMNDAEYTCM+SSL+          +Y+EWE+VS TGD +++N+LLAAYIN + 
Sbjct: 302  MKSLFCKMNDAEYTCMLSSLIKLEEIEKAENLYTEWESVSGTGDPQVANILLAAYINRNQ 361

Query: 452  MEKAESFYGRMVQKGIRPSYTTWELLTWGFLKLKQMDKVLHYFQKAIESVGKWEPDDRII 273
            +E +E+FY RMV+KG+ P YTTWELLTWG LK KQM+KVL  F+KAI  V  W PD R++
Sbjct: 362  IEDSENFYRRMVEKGVCPCYTTWELLTWGHLKTKQMEKVLDCFKKAITIVKTWSPDKRLV 421

Query: 272  REVFHNLSKQRDVEGAEKLLVILREAGHVTTEIYNALLRTYEKAGKMPLIVAERMKKDTV 93
            REVF  L ++ + EGAE+ LV+LR AG+V+TEIYN+LLRTY KAGKMPLIV ERMKKD V
Sbjct: 422  REVFKILEEKGNAEGAEEFLVMLRNAGYVSTEIYNSLLRTYAKAGKMPLIVTERMKKDGV 481

Query: 92   DLNEETQELIKLTS 51
            +L+EET  LIK TS
Sbjct: 482  ELDEETHRLIKTTS 495