BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028295
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003589699.1| Pentatricopeptide repeat-containing protein ...   101   7e-20
ref|XP_002314968.1| predicted protein [Populus trichocarpa] gi|2...    99   4e-19
ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containi...    98   8e-19
ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containi...    96   3e-18
ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containi...    96   3e-18

>ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355478747|gb|AES59950.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  101 bits (251), Expect = 7e-20
 Identities = 47/90 (52%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
 Frame = -2

Query: 310 AYCKQGKVKSAIDA-NRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKEGTF 134
           AYCK GKVK+AI   + +       AD+ITHT ++ G+C W   +EA+ YL +MLK G F
Sbjct: 568 AYCKLGKVKTAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIF 627

Query: 133 PCVATWNVLVRSLFSKMGSLGPTQLLDDIL 44
           P +ATWNVLVR  FSK+G +GP ++LDDI+
Sbjct: 628 PNIATWNVLVRGFFSKLGHMGPIRILDDII 657


>ref|XP_002314968.1| predicted protein [Populus trichocarpa] gi|222864008|gb|EEF01139.1|
           predicted protein [Populus trichocarpa]
          Length = 662

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
 Frame = -2

Query: 319 IILAYCKQGKVKSAID-ANRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKE 143
           +I AYCKQG+VK+AI   +RL      + D+ T+TSL+ G+C W  + EA+ +L KM+ E
Sbjct: 564 VIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINE 623

Query: 142 GTFPCVATWNVLVRSLFSKMGSLGPTQLLDDILENG 35
           G  P  ATWN LVR LFSK+G LGP  ++D+IL NG
Sbjct: 624 GICPNRATWNALVRGLFSKLGHLGPIHIVDNILANG 659


>ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 50/95 (52%), Positives = 63/95 (66%)
 Frame = -2

Query: 319 IILAYCKQGKVKSAIDANRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKEG 140
           +I AYCKQGKV  AI     ++  + H D+I +TSLISG+C    ++EA+ YL +ML EG
Sbjct: 567 VIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEG 626

Query: 139 TFPCVATWNVLVRSLFSKMGSLGPTQLLDDILENG 35
             P VATWNVLVR LFS MG  G  Q LD +L +G
Sbjct: 627 ISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGSG 661


>ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 47/96 (48%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
 Frame = -2

Query: 319 IILAYCKQGKVKSAID-ANRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKE 143
           +I AYCKQGKVK A     R+ +    H D+IT+TSLI G C W  ++EAM +L K + +
Sbjct: 565 MIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQ 624

Query: 142 GTFPCVATWNVLVRSLFSKMGSLGPTQLLDDILENG 35
           G  P  ATWN LVR  F  +G +GP  +LDDIL  G
Sbjct: 625 GICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660


>ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 47/96 (48%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
 Frame = -2

Query: 319 IILAYCKQGKVKSAID-ANRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKE 143
           +I AYCKQGKVK A     R+ +    H D+IT+TSLI G C W  ++EAM +L K + +
Sbjct: 565 MIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQ 624

Query: 142 GTFPCVATWNVLVRSLFSKMGSLGPTQLLDDILENG 35
           G  P  ATWN LVR  F  +G +GP  +LDDIL  G
Sbjct: 625 GICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660