BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028282
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP46207.1| putative retrotransposon protein [Oryza sativa Ja...   126   2e-27
gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]    126   2e-27
gb|ABY49842.1| hypothetical protein [Vitis hybrid cultivar]           123   2e-26
emb|CAN71748.1| hypothetical protein VITISV_019194 [Vitis vinifera]   123   2e-26
gb|AAO26687.1|AF478374_1 gag-pol polyprotein [Vitis vinifera]         121   5e-26

>gb|AAP46207.1| putative retrotransposon protein [Oryza sativa Japonica Group]
          Length = 1176

 Score =  126 bits (316), Expect = 2e-27
 Identities = 59/106 (55%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
 Frame = -1

Query: 315 TSNTQTPQQNGKSERKNRHILDLARAMSIGINVPSRFWSDAVLTAVYLINRSPSRAFGFR 136
           TS   TP QNG +ERKNRH+L++AR++   +NVP   WS+AV+TA YLINR+PSR  G +
Sbjct: 476 TSCPDTPPQNGVAERKNRHLLEIARSLMYTMNVPKFLWSEAVMTAAYLINRTPSRILGMK 535

Query: 135 TPYSIIHPDRSVFQIPPRVYGCVCFIQVTR-SISKLDPRALKCVFL 1
           TPY +I   ++ F +PPRV+GC CF++  R SI KLDPRA+KC+F+
Sbjct: 536 TPYEMIF-GKNEFVVPPRVFGCTCFVRDHRPSIGKLDPRAVKCIFI 580


>gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]
          Length = 1472

 Score =  126 bits (316), Expect = 2e-27
 Identities = 59/106 (55%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
 Frame = -1

Query: 315 TSNTQTPQQNGKSERKNRHILDLARAMSIGINVPSRFWSDAVLTAVYLINRSPSRAFGFR 136
           TS   TP QNG +ERKNRH+L++AR++   +NVP   WS+AV+TA YLINR+PSR  G +
Sbjct: 649 TSCPDTPPQNGVAERKNRHLLEIARSLMYTMNVPKFLWSEAVMTAAYLINRTPSRILGMK 708

Query: 135 TPYSIIHPDRSVFQIPPRVYGCVCFIQVTR-SISKLDPRALKCVFL 1
           TPY +I   ++ F +PPRV+GC CF++  R SI KLDPRA+KC+F+
Sbjct: 709 TPYEMIF-GKNEFVVPPRVFGCTCFVRDHRPSIGKLDPRAVKCIFI 753


>gb|ABY49842.1| hypothetical protein [Vitis hybrid cultivar]
          Length = 1382

 Score =  123 bits (308), Expect = 2e-26
 Identities = 55/106 (51%), Positives = 77/106 (72%), Gaps = 1/106 (0%)
 Frame = -1

Query: 315 TSNTQTPQQNGKSERKNRHILDLARAMSIGINVPSRFWSDAVLTAVYLINRSPSRAFGFR 136
           TS   TP QNG +ERKNRH+L+ ARA+   + VP +FW+DAV TA +LINR P+      
Sbjct: 604 TSCVDTPSQNGVAERKNRHLLETARALMFQMKVPKQFWADAVSTACFLINRMPTVVLKGD 663

Query: 135 TPYSIIHPDRSVFQIPPRVYGCVCFIQVTRS-ISKLDPRALKCVFL 1
            PY +IHP +S+F + PR++GC C+++ TR  ++KLDP+AL+CVFL
Sbjct: 664 IPYKVIHPQKSLFPLAPRIFGCTCYVRDTRPFVTKLDPKALQCVFL 709


>emb|CAN71748.1| hypothetical protein VITISV_019194 [Vitis vinifera]
          Length = 1306

 Score =  123 bits (308), Expect = 2e-26
 Identities = 55/106 (51%), Positives = 77/106 (72%), Gaps = 1/106 (0%)
 Frame = -1

Query: 315 TSNTQTPQQNGKSERKNRHILDLARAMSIGINVPSRFWSDAVLTAVYLINRSPSRAFGFR 136
           TS   TP QNG +ERKNRH+L+ ARA+   + VP +FW+DAV TA +LINR P+      
Sbjct: 595 TSCVDTPSQNGVAERKNRHLLETARALMFQMKVPKQFWADAVSTACFLINRMPTVVLKGD 654

Query: 135 TPYSIIHPDRSVFQIPPRVYGCVCFIQVTRS-ISKLDPRALKCVFL 1
            PY +IHP +S+F + PR++GC C+++ TR  ++KLDP+AL+CVFL
Sbjct: 655 IPYKVIHPQKSLFPLAPRIFGCTCYVRDTRPFVTKLDPKALQCVFL 700


>gb|AAO26687.1|AF478374_1 gag-pol polyprotein [Vitis vinifera]
          Length = 197

 Score =  121 bits (304), Expect = 5e-26
 Identities = 55/106 (51%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
 Frame = -1

Query: 315 TSNTQTPQQNGKSERKNRHILDLARAMSIGINVPSRFWSDAVLTAVYLINRSPSRAFGFR 136
           TS   TP QNG +ERKNRH+L+ ARA+   + VP +FW+DAV TA +LINR P+      
Sbjct: 89  TSCVDTPSQNGVAERKNRHLLETARALMFQMKVPKQFWADAVSTACFLINRMPTVVLKGD 148

Query: 135 TPYSIIHPDRSVFQIPPRVYGCVCFIQVTRS-ISKLDPRALKCVFL 1
            PY  IHP +S+F + PR++GC C+++ TR  ++KLDP+AL+CVFL
Sbjct: 149 IPYKAIHPQKSLFPLAPRIFGCTCYVRDTRPFVTKLDPKALQCVFL 194