BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028264
         (318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269069.2| PREDICTED: E3 ubiquitin-protein ligase ATL4-...    67   2e-09
ref|NP_191581.1| E3 ubiquitin-protein ligase ATL4 [Arabidopsis t...    67   2e-09
gb|AAC69858.1| RING-H2 finger protein RHX1a, partial [Arabidopsi...    66   3e-09
ref|XP_002878324.1| hypothetical protein ARALYDRAFT_486491 [Arab...    64   1e-08
gb|AAD33582.1|AF132014_1 RING-H2 zinc finger protein ATL4 [Arabi...    64   2e-08

>ref|XP_002269069.2| PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Vitis vinifera]
          Length = 342

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 40/90 (44%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
 Frame = -2

Query: 266 HFLLRYLXXXXXXXXXXXXXNVAPPQTTTIQERISNRRVAPE--TLINSLPIFXXXXXXX 93
           + LLRYL              + P  +     R S+RRV+PE  +LI+SLP+F       
Sbjct: 58  YLLLRYLSRRCSERLHSDDVVLPPVDS---DRRFSSRRVSPEDLSLIDSLPLFTFGSVRG 114

Query: 92  XXXXXXSADCAVCLSKFEPHDQLRLLPLCC 3
                   DCAVCLSKFEPHDQLRLLP+CC
Sbjct: 115 RNSSSE-GDCAVCLSKFEPHDQLRLLPICC 143


>ref|NP_191581.1| E3 ubiquitin-protein ligase ATL4 [Arabidopsis thaliana]
           gi|68565314|sp|Q9LY41.1|ATL4_ARATH RecName: Full=E3
           ubiquitin-protein ligase ATL4; AltName: Full=Protein
           ARABIDOPSIS TOXICOS EN LEVADURA 4; Short=Protein ATL4;
           AltName: Full=RING-H2 finger protein ATL4; AltName:
           Full=RING-H2 finger protein RHX1a
           gi|7576198|emb|CAB87859.1| RING-H2 zinc finger protein
           ATL4 [Arabidopsis thaliana] gi|66865934|gb|AAY57601.1|
           RING finger family protein [Arabidopsis thaliana]
           gi|114050661|gb|ABI49480.1| At3g60220 [Arabidopsis
           thaliana] gi|332646504|gb|AEE80025.1| E3
           ubiquitin-protein ligase ATL4 [Arabidopsis thaliana]
          Length = 334

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 40/91 (43%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
 Frame = -2

Query: 263 FLLRYLXXXXXXXXXXXXXNVAPPQTTTIQERISNRRVAPET----LINSLPIFXXXXXX 96
           FLLR L             + +    T+   R S  RV+PET    +++SLPIF      
Sbjct: 47  FLLRCLNRCSHRSVLPLSSSSSVATVTSDSRRFSGHRVSPETERSSVLDSLPIFKFSSVT 106

Query: 95  XXXXXXXSADCAVCLSKFEPHDQLRLLPLCC 3
                  S DCAVCLSKFEP DQLRLLPLCC
Sbjct: 107 RRSSSMNSGDCAVCLSKFEPEDQLRLLPLCC 137


>gb|AAC69858.1| RING-H2 finger protein RHX1a, partial [Arabidopsis thaliana]
          Length = 273

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 35/65 (53%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
 Frame = -2

Query: 185 TTIQERISNRRVAPET----LINSLPIFXXXXXXXXXXXXXSADCAVCLSKFEPHDQLRL 18
           T+   R S  RV+PET    +++SLPIF             S DCAVCLSKFEP DQLRL
Sbjct: 12  TSDSRRFSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRL 71

Query: 17  LPLCC 3
           LPLCC
Sbjct: 72  LPLCC 76


>ref|XP_002878324.1| hypothetical protein ARALYDRAFT_486491 [Arabidopsis lyrata subsp.
           lyrata] gi|297324162|gb|EFH54583.1| hypothetical protein
           ARALYDRAFT_486491 [Arabidopsis lyrata subsp. lyrata]
          Length = 334

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 34/65 (52%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
 Frame = -2

Query: 185 TTIQERISNRRVAPET----LINSLPIFXXXXXXXXXXXXXSADCAVCLSKFEPHDQLRL 18
           T+   R S  RV+PET    +++SLPIF             S DCAVCLSKFEP +QLRL
Sbjct: 74  TSDSRRFSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSTNSGDCAVCLSKFEPEEQLRL 133

Query: 17  LPLCC 3
           LPLCC
Sbjct: 134 LPLCC 138


>gb|AAD33582.1|AF132014_1 RING-H2 zinc finger protein ATL4 [Arabidopsis thaliana]
          Length = 326

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 39/91 (42%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
 Frame = -2

Query: 263 FLLRYLXXXXXXXXXXXXXNVAPPQTTTIQERISNRRVAPET----LINSLPIFXXXXXX 96
           FLLR L             + +    T+   R S  RV+PET    +++SLPIF      
Sbjct: 39  FLLRCLNRCSHRSVLPLSSSSSVATVTSDSRRFSGHRVSPETERSSVLDSLPIFKFSSVT 98

Query: 95  XXXXXXXSADCAVCLSKFEPHDQLRLLPLCC 3
                  S DCAVCLSKFE  DQLRLLPLCC
Sbjct: 99  RRSSSMNSGDCAVCLSKFESEDQLRLLPLCC 129