BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028174
         (419 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34194.3| unnamed protein product [Vitis vinifera]              123   2e-26
ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synt...   123   2e-26
ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C...   118   6e-25
ref|XP_004171457.1| PREDICTED: multisubstrate pseudouridine synt...   116   2e-24
ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana] g...   114   6e-24

>emb|CBI34194.3| unnamed protein product [Vitis vinifera]
          Length = 693

 Score =  123 bits (308), Expect = 2e-26
 Identities = 69/111 (62%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
 Frame = +1

Query: 91  MKTLEESDVGIQYYISKLPGFRGILKQRYADFIVNEVDCDGKVVHLTCLDAP---LXXXX 261
           MK LEESDVGI +YIS+LPGFRGILKQRY DFIVNEVD DG VVHLT LDAP   +    
Sbjct: 1   MKHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNE 60

Query: 262 XXXXXXXXXXXXXXIESFRSLAGDMDAELLKALIDKVTSGGTDDASPIVLS 414
                         IE FRSL GD D E LK LID+V SG  D  SPIVLS
Sbjct: 61  TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLS 111


>ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis
           vinifera]
          Length = 694

 Score =  123 bits (308), Expect = 2e-26
 Identities = 69/111 (62%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
 Frame = +1

Query: 91  MKTLEESDVGIQYYISKLPGFRGILKQRYADFIVNEVDCDGKVVHLTCLDAP---LXXXX 261
           MK LEESDVGI +YIS+LPGFRGILKQRY DFIVNEVD DG VVHLT LDAP   +    
Sbjct: 1   MKHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNE 60

Query: 262 XXXXXXXXXXXXXXIESFRSLAGDMDAELLKALIDKVTSGGTDDASPIVLS 414
                         IE FRSL GD D E LK LID+V SG  D  SPIVLS
Sbjct: 61  TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLS 111


>ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C1A4.09-like [Cucumis
           sativus]
          Length = 719

 Score =  118 bits (295), Expect = 6e-25
 Identities = 71/144 (49%), Positives = 83/144 (57%), Gaps = 15/144 (10%)
 Frame = +1

Query: 31  SKKTQLKPY-----------SNSTLFTKTITMKTLEESDVGIQYYISKLPGFRGILKQRY 177
           S  T LKPY           +N +     +T K++ ESDVGI  YIS LPGFRGILKQRY
Sbjct: 9   SSFTVLKPYFLYNSLTTPKLTNRSSSIAVMTTKSVGESDVGILSYISSLPGFRGILKQRY 68

Query: 178 ADFIVNEVDCDGKVVHLTCLDAP----LXXXXXXXXXXXXXXXXXXIESFRSLAGDMDAE 345
           +DFIVNEVD DG VVHLT LDAP    +                  IE FRSLAGD DAE
Sbjct: 69  SDFIVNEVDTDGNVVHLTSLDAPPEVIVSESGPTIVHSTSQSYASEIELFRSLAGDSDAE 128

Query: 346 LLKALIDKVTSGGTDDASPIVLSP 417
           +L+  + ++ SG  DD  PIV SP
Sbjct: 129 ILEIFLKQINSGVNDDILPIVFSP 152


>ref|XP_004171457.1| PREDICTED: multisubstrate pseudouridine synthase 7-like, partial
           [Cucumis sativus]
          Length = 402

 Score =  116 bits (290), Expect = 2e-24
 Identities = 64/114 (56%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
 Frame = +1

Query: 85  ITMKTLEESDVGIQYYISKLPGFRGILKQRYADFIVNEVDCDGKVVHLTCLDAP---LXX 255
           +T K++ ESDVGI  YIS LPGFRGILKQRY+DFIVNEVD DG VVHLT LDAP   +  
Sbjct: 1   MTTKSVGESDVGILSYISSLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPEIVSE 60

Query: 256 XXXXXXXXXXXXXXXXIESFRSLAGDMDAELLKALIDKVTSGGTDDASPIVLSP 417
                           IE FRSLAGD DAE+L+  + ++ SG  DD  PIV SP
Sbjct: 61  SGPTIVHSTSQSYASEIELFRSLAGDSDAEILEIFLKQINSGVNDDILPIVFSP 114


>ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana]
           gi|52354299|gb|AAU44470.1| hypothetical protein
           AT3G04820 [Arabidopsis thaliana]
           gi|61742699|gb|AAX55170.1| hypothetical protein
           At3g04820 [Arabidopsis thaliana]
           gi|332640619|gb|AEE74140.1| pseudouridine synthase
           [Arabidopsis thaliana]
          Length = 715

 Score =  114 bits (286), Expect = 6e-24
 Identities = 67/136 (49%), Positives = 83/136 (61%), Gaps = 12/136 (8%)
 Frame = +1

Query: 46  LKPYSNSTLFTKTIT-------MKTLEESDVGIQYYISKLPGFRGILKQRYADFIVNEVD 204
           LKPYS+ +  TK  T       MKT++E+DVGI  +IS+LPGFRGILKQRYADFIVNEVD
Sbjct: 15  LKPYSSLSWTTKIATIATNFEGMKTVDEADVGISCFISQLPGFRGILKQRYADFIVNEVD 74

Query: 205 CDGKVVHLTCLDAP-----LXXXXXXXXXXXXXXXXXXIESFRSLAGDMDAELLKALIDK 369
            DG VVHLT LD P                        +ESF+S++   DAE L+ LI++
Sbjct: 75  MDGNVVHLTSLDLPPEMAVKEEDKAKSCDNVPQNYTSAVESFKSISSVTDAERLEILINQ 134

Query: 370 VTSGGTDDASPIVLSP 417
           VTSG   +  P+VL P
Sbjct: 135 VTSGTDGEVLPVVLDP 150