BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028117
         (571 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK33630.1| unknown [Lotus japonicus]                               91   1e-16
ref|XP_003631528.1| PREDICTED: pentatricopeptide repeat-containi...    91   1e-16
emb|CAN69066.1| hypothetical protein VITISV_016070 [Vitis vinifera]    91   1e-16
ref|XP_003516509.1| PREDICTED: pentatricopeptide repeat-containi...    91   2e-16
ref|XP_003612457.1| Pentatricopeptide repeat-containing protein ...    87   1e-15

>gb|AFK33630.1| unknown [Lotus japonicus]
          Length = 356

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
 Frame = -1

Query: 523 SAADILCFMDVLKLSIPHGVYVYLIKECTHIRDAETGVQVHTHMTKSGHGMTLLLANRLL 344
           + + IL  MDVL   IP  +Y  LIKECT   D +T +++HTH+  SG    L   NR+L
Sbjct: 13  TTSHILHLMDVLPFPIPIDIYTSLIKECTLSPDPQTAIELHTHIAHSGIKPPLSFINRIL 72

Query: 343 FMYVSCGSLDSARELFDKMIVKDSISWAIMIASCVEN-EYLEALTLF 206
            M+VSCG LD A +LFD M VKD  SWA +  +  +N +Y EA+ +F
Sbjct: 73  VMFVSCGLLDYACQLFDAMPVKDFNSWATLFIAYYDNADYEEAIDVF 119


>ref|XP_003631528.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31790-like [Vitis vinifera]
          Length = 414

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
 Frame = -1

Query: 526 TSAADILCFMDVLKLSIPHGVYVYLIKECTHIRDAETGVQVHTHMTKSGHGMTLLLANRL 347
           ++  DIL  MD L L IP  +Y  LIKE +   DA    Q+  H+ +SG  ++  L NR+
Sbjct: 59  STPTDILRLMDGLGLPIPPDIYASLIKESSTTGDATQATQLLAHINRSGLPLSSALLNRI 118

Query: 346 LFMYVSCGSLDSARELFDKMIV--KDSISWAIMIASCVENEYLEALTLFRYKQMGYQYMN 173
           L MYVSCG + +AR +FDKM V  K+SISWAIM+A+ ++N + E   +F + QM  +  +
Sbjct: 119 LLMYVSCGLIHTARHMFDKMNVLNKNSISWAIMLAAYMDNGFYEE-AIFLFVQM-MELHS 176

Query: 172 TMQFEL 155
           T+  EL
Sbjct: 177 TIMLEL 182


>emb|CAN69066.1| hypothetical protein VITISV_016070 [Vitis vinifera]
          Length = 543

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
 Frame = -1

Query: 526 TSAADILCFMDVLKLSIPHGVYVYLIKECTHIRDAETGVQVHTHMTKSGHGMTLLLANRL 347
           ++  DIL  MD L L IP  +Y  LIKE +   DA    Q+  H+ +SG  ++  L NR+
Sbjct: 222 STPTDILRLMDGLGLPIPPDIYASLIKESSTTGDATQATQLLAHINRSGLPLSSALLNRI 281

Query: 346 LFMYVSCGSLDSARELFDKMIV--KDSISWAIMIASCVENEYLEALTLFRYKQMGYQYMN 173
           L MYVSCG + +AR +FDKM V  K+SISWAIM+A+ ++N + E   +F + QM  +  +
Sbjct: 282 LLMYVSCGLIHTARHMFDKMNVLNKNSISWAIMLAAYMDNGFYEE-AIFLFVQM-MELHS 339

Query: 172 TMQFEL 155
           T+  EL
Sbjct: 340 TIMLEL 345


>ref|XP_003516509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31790-like [Glycine max]
          Length = 423

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 46/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
 Frame = -1

Query: 523 SAADILCFMDVLKLSIPHGVYVYLIKECTHIRDAETGVQVHTHMTKSGHGMTLLLANRLL 344
           + +DIL  M+ L   +P  +Y  LIKECT   D ET +++ TH++KSG    L   NR+L
Sbjct: 80  TTSDILHLMEALPFPVPIDIYTSLIKECTVSGDPETAIELATHISKSGIKPPLPFLNRIL 139

Query: 343 FMYVSCGSLDSARELFDKMIVKDSISWAIMIASCVEN-EYLEALTLF 206
            M+VSCG L++AR +FDKM V+D  +WA +  +  +N +Y EA  +F
Sbjct: 140 VMFVSCGLLENARHMFDKMRVRDFNTWATLFVAYYDNTDYEEATNVF 186


>ref|XP_003612457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513792|gb|AES95415.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 418

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
 Frame = -1

Query: 523 SAADILCFMDVLKLSIPHGVYVYLIKECTHIRDAETGVQVHTHMTKSGHGMTLLLANRLL 344
           + + IL  MD L   I   +Y  L+KECT   D ET +++HT +   G  + L L NR+L
Sbjct: 73  TTSHILPLMDALHFPITIDIYTSLVKECTLSTDPETAIELHTQIITRGIELPLTLLNRIL 132

Query: 343 FMYVSCGSLDSARELFDKMIVKDSISWAIMIASCVEN-EYLEALTLF 206
            M+VSCG L++AR +FD M V+D  SWA +  S  EN EY  A+ +F
Sbjct: 133 IMFVSCGLLENARRVFDVMSVRDFHSWATLFVSYYENGEYENAIDVF 179



 Score = 55.5 bits (132), Expect = 6e-06
 Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
 Frame = -1

Query: 541 HDMAVTSAADILCFMDVLKLSIPHGVYVYLIKECTHIRDAETGVQVHTHMTKSGHGMTLL 362
           ++ A+     +LC +DV+  S P  ++  L+K C    +   G+QVH  + K G    +L
Sbjct: 172 YENAIDVFVSMLCQLDVMGFSFPPWIWSCLLKACACTMNVPLGMQVHGCLLKLGACDHVL 231

Query: 361 LANRLLFMYVSCGSLDSARELFDKMIVKDSISW-AIMIASCVENEYLEALTLFRYKQMG 188
           +++ L+  Y     L+ A  +F+++   ++++W A +++SC E  + EAL  F  K+MG
Sbjct: 232 ISSSLIRFYGRFKCLEDANMVFNRVSRHNTLTWTAKIVSSCRERHFSEALGDF--KKMG 288