BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028111
         (620 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510330.1| ubiquitin-protein ligase, putative [Ricinus ...   115   8e-24
ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago trunc...   113   3e-23
ref|XP_003589307.1| F-box/FBD/LRR-repeat protein [Medicago trunc...   113   3e-23
emb|CAN72282.1| hypothetical protein VITISV_043941 [Vitis vinifera]   110   2e-22
ref|XP_002278942.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g...   110   3e-22

>ref|XP_002510330.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223551031|gb|EEF52517.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 426

 Score =  115 bits (287), Expect = 8e-24
 Identities = 69/208 (33%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
 Frame = +1

Query: 1   HNGMISKFEVNEFVEKECPYVDEWILVLQRKNVKHLVLKFNEYRSPVYDVPTCLFSCQTL 180
           HNG I KF+++         +D WIL L R ++K  +L+   ++   Y VP+ LFS + L
Sbjct: 90  HNGPIQKFKLSHRDLLGVSDIDRWILHLSRSSIKEFILEI--WKGQRYKVPSSLFSFEHL 147

Query: 181 CKLKLQGCILNLPTQYKGFRNLTDLELVFVTITNQSFENLVAKIPLLRRLSIWNCESLTC 360
             L+L  C+L  P  +KGFR+L  L+L  +T+T   FENL+   PLL RL++ N +  T 
Sbjct: 148 IHLELFNCLLQPPLTFKGFRSLKSLDLQHITLTQNVFENLIFSCPLLERLTLMNFDGFTH 207

Query: 361 FNISALNLKTVRLCGVFESINWRNTPNVGIATLA------TRRPSGSGPTTIVCKLDDVL 522
            NI+A NL+   + GV++ + + NT  + + ++         R  G G ++   KL    
Sbjct: 208 LNINAPNLQFFDIGGVYDDVTFENTFQLTLVSIGLYVNVQNDRNVGHGSSS---KLLRFF 264

Query: 523 GGLSGVRCMVIRHPFLEFLSMDTAPKRL 606
             L  +R + ++  FL++LS+   P RL
Sbjct: 265 ANLPHIRRLEVQSYFLKYLSIGNVPSRL 292


>ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
           gi|355478356|gb|AES59559.1| F-box/FBD/LRR-repeat protein
           [Medicago truncatula]
          Length = 428

 Score =  113 bits (282), Expect = 3e-23
 Identities = 68/205 (33%), Positives = 112/205 (54%), Gaps = 3/205 (1%)
 Frame = +1

Query: 1   HNGMISKFEVNEFVEKECPYVDEWILVLQRKNVKHLVLKFNEYRSPVYDVPTCLFSCQTL 180
           H+G I KF+++         +D W L L R+ VK  VL+   ++   Y +P+CLFSCQ L
Sbjct: 91  HSGPIKKFKLSHRELIGVTDIDRWTLHLTRRPVKEFVLEI--WKGQRYKIPSCLFSCQGL 148

Query: 181 CKLKLQGCILNLPTQYKGFRNLTDLELVFVTITNQSFENLVAKIPLLRRLSIWNCESLTC 360
             L+L  C L  P+ ++GFRNL  L+L  VT++  +FENL++  PLL RL++ N +    
Sbjct: 149 HHLELFNCWLIPPSTFQGFRNLKSLDLQHVTLSQDAFENLISTCPLLERLTLMNFDGFNY 208

Query: 361 FNISALNLKTVRLCGVFESINWRNTPNVGIATLATRRPSGSGPTTI---VCKLDDVLGGL 531
            NI A NL+   + G FE I+++NT  + + ++       S    +      L + L  L
Sbjct: 209 LNIHAPNLQFFDIGGKFEDISFKNTSQLAVVSIGLYVNFESSQGRLHGRTSNLVEFLIHL 268

Query: 532 SGVRCMVIRHPFLEFLSMDTAPKRL 606
             ++ + I+  FL++L++   P +L
Sbjct: 269 PRIQRLEIQSYFLKYLALGAVPVKL 293


>ref|XP_003589307.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
           gi|355478355|gb|AES59558.1| F-box/FBD/LRR-repeat protein
           [Medicago truncatula]
          Length = 660

 Score =  113 bits (282), Expect = 3e-23
 Identities = 68/205 (33%), Positives = 112/205 (54%), Gaps = 3/205 (1%)
 Frame = +1

Query: 1   HNGMISKFEVNEFVEKECPYVDEWILVLQRKNVKHLVLKFNEYRSPVYDVPTCLFSCQTL 180
           H+G I KF+++         +D W L L R+ VK  VL+   ++   Y +P+CLFSCQ L
Sbjct: 323 HSGPIKKFKLSHRELIGVTDIDRWTLHLTRRPVKEFVLEI--WKGQRYKIPSCLFSCQGL 380

Query: 181 CKLKLQGCILNLPTQYKGFRNLTDLELVFVTITNQSFENLVAKIPLLRRLSIWNCESLTC 360
             L+L  C L  P+ ++GFRNL  L+L  VT++  +FENL++  PLL RL++ N +    
Sbjct: 381 HHLELFNCWLIPPSTFQGFRNLKSLDLQHVTLSQDAFENLISTCPLLERLTLMNFDGFNY 440

Query: 361 FNISALNLKTVRLCGVFESINWRNTPNVGIATLATRRPSGSGPTTI---VCKLDDVLGGL 531
            NI A NL+   + G FE I+++NT  + + ++       S    +      L + L  L
Sbjct: 441 LNIHAPNLQFFDIGGKFEDISFKNTSQLAVVSIGLYVNFESSQGRLHGRTSNLVEFLIHL 500

Query: 532 SGVRCMVIRHPFLEFLSMDTAPKRL 606
             ++ + I+  FL++L++   P +L
Sbjct: 501 PRIQRLEIQSYFLKYLALGAVPVKL 525


>emb|CAN72282.1| hypothetical protein VITISV_043941 [Vitis vinifera]
          Length = 397

 Score =  110 bits (275), Expect = 2e-22
 Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 8/210 (3%)
 Frame = +1

Query: 1   HNGMISKFEVNEFVEKECPYVDEWILVLQRKNVKHLVLKFNEYRSPVYDVPTCLFSCQTL 180
           H+G I KF++  +       +D+W+  L  K +K  VLK   Y    + +P CLFSCQ L
Sbjct: 85  HSGPIEKFKLAAYCCPNHLDLDQWMHFLAEKGIKEFVLK-EFYFIRRFKLPCCLFSCQQL 143

Query: 181 CKLKLQGCILNLPTQYKGFRNLTDLELVFVTITNQSFENLVAKIPLLRRLSIWNCESLTC 360
             L+L GC   LP ++KGF+ L  L+L  V + + + E+L+ + P+L RL +   + LTC
Sbjct: 144 RHLELYGCTFKLPPEFKGFKCLASLQLRQVCVDSDTLESLILQCPVLERLILLKIDGLTC 203

Query: 361 FNISALNLKTVRLCGVFESINWRNTPNVGIATLATRRPSGSGPTTIVCKLDD-------- 516
             I   NLK +++   F +I   N P   ++++     S +    + C L++        
Sbjct: 204 LKIHNPNLKYLKIYTEFGNIYLENNPL--LSSIDIHPTSVNLEMNMFCSLEEWKACNLFR 261

Query: 517 VLGGLSGVRCMVIRHPFLEFLSMDTAPKRL 606
           VLG LSGV+   +   FLEF+     P+RL
Sbjct: 262 VLGCLSGVKRFSLSGHFLEFJGTSNVPERL 291


>ref|XP_002278942.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Vitis
           vinifera]
          Length = 425

 Score =  110 bits (274), Expect = 3e-22
 Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 8/210 (3%)
 Frame = +1

Query: 1   HNGMISKFEVNEFVEKECPYVDEWILVLQRKNVKHLVLKFNEYRSPVYDVPTCLFSCQTL 180
           H+G I KF++  +       +D+W+  L  K +K  VLK   Y    + +P CLFSCQ L
Sbjct: 85  HSGPIEKFKLAAYCCPNHLDLDQWMHFLAEKGIKEFVLK-EFYFIRRFKLPCCLFSCQQL 143

Query: 181 CKLKLQGCILNLPTQYKGFRNLTDLELVFVTITNQSFENLVAKIPLLRRLSIWNCESLTC 360
             L+L GC   LP ++KGF+ L  L+L  V + + + E+L+ + P+L RL +   + LTC
Sbjct: 144 RHLELYGCTFKLPPEFKGFKCLASLQLRQVCVDSDTLESLILQCPVLERLILLKIDGLTC 203

Query: 361 FNISALNLKTVRLCGVFESINWRNTPNVGIATLATRRPSGSGPTTIVCKLDD-------- 516
             I   NLK +++   F +I   N P   ++++     S +    + C L++        
Sbjct: 204 LKIHNPNLKYLKIYTEFGNIYLENNPL--LSSIDIHPTSVNLEMNMFCSLEEWKACNLFR 261

Query: 517 VLGGLSGVRCMVIRHPFLEFLSMDTAPKRL 606
           VLG LSGV+   +   FLEF+     P+RL
Sbjct: 262 VLGCLSGVKRFSLSGHFLEFIGTSNVPERL 291