BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028105
         (531 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containi...   239   2e-61
emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]   238   4e-61
ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containi...   235   3e-60
ref|XP_002528570.1| pentatricopeptide repeat-containing protein,...   227   9e-58
ref|XP_002301973.1| predicted protein [Populus trichocarpa] gi|2...   214   5e-54

>ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  239 bits (610), Expect = 2e-61
 Identities = 114/177 (64%), Positives = 135/177 (76%)
 Frame = -1

Query: 531 CVDKAKELFEEMTSFGVEPNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTIS 352
           CVD+AK LF EM   GV+PNL+SWNG+IAGFN +G  SE+V +   MH  GF PDGTTIS
Sbjct: 195 CVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTIS 254

Query: 351 CVLPVVGDLQDSKMGIQIHGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARM 172
            VLP VGDL+D  MGI IHGYV+KQGL  D CV  AL+DMYGKC C  EM +VF ++  M
Sbjct: 255 SVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHM 314

Query: 171 DLGSCNALVSGLSRNGLVDDALHTFMQFKDQEIELNVVSWTSIIASCTQNGKDIEAL 1
           D+GSCNA + GLSRNG V+ +L  F Q KDQ +ELNVVSWTS+IA C+QNG+DIEAL
Sbjct: 315 DVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEAL 371



 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 50/170 (29%), Positives = 93/170 (54%)
 Frame = -1

Query: 528 VDKAKELFEEMTSFGVEPNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTISC 349
           V+ +  LF ++   G+E N+VSW  +IA  +QNG   E++ +   M   G  P+  TI C
Sbjct: 332 VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPC 391

Query: 348 VLPVVGDLQDSKMGIQIHGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARMD 169
           +LP  G++     G   H + +++G+  D  V  AL+DMY KCG     +  F  +   +
Sbjct: 392 LLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKN 451

Query: 168 LGSCNALVSGLSRNGLVDDALHTFMQFKDQEIELNVVSWTSIIASCTQNG 19
           L   NA+++G + +G   +A+  F   +    + +++S+T ++++C+Q+G
Sbjct: 452 LVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSG 501



 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 49/160 (30%), Positives = 79/160 (49%)
 Frame = -1

Query: 480 EPNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTISCVLPVVGDLQDSKMGIQ 301
           EPN+ S++ LI  F++      ++S   +M + G +PD   +   +     L   K   Q
Sbjct: 76  EPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQ 135

Query: 300 IHGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARMDLGSCNALVSGLSRNGL 121
           +HG     G   D+ V  +LV MY KC    +  RVF  +   D+ S +ALV+  +R G 
Sbjct: 136 VHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGC 195

Query: 120 VDDALHTFMQFKDQEIELNVVSWTSIIASCTQNGKDIEAL 1
           VD+A   F +  D  ++ N++SW  +IA    +G   EA+
Sbjct: 196 VDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAV 235


>emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  238 bits (607), Expect = 4e-61
 Identities = 113/177 (63%), Positives = 135/177 (76%)
 Frame = -1

Query: 531 CVDKAKELFEEMTSFGVEPNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTIS 352
           CVD+AK LF EM   GV+PNL+SWNG+IAGFN +G  SE+V +   MH  GF PDGTTIS
Sbjct: 195 CVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTIS 254

Query: 351 CVLPVVGDLQDSKMGIQIHGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARM 172
            VLP VGDL+D  MGI IHGYV+KQGL  D CV  AL+DMYGKC C  EM +VF ++  M
Sbjct: 255 SVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHM 314

Query: 171 DLGSCNALVSGLSRNGLVDDALHTFMQFKDQEIELNVVSWTSIIASCTQNGKDIEAL 1
           D+GSCNA + GLSRNG V+ +L  F Q KDQ +ELNVVSWTS+IA C+QNG+D+EAL
Sbjct: 315 DVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEAL 371



 Score = 95.1 bits (235), Expect = 6e-18
 Identities = 50/170 (29%), Positives = 93/170 (54%)
 Frame = -1

Query: 528 VDKAKELFEEMTSFGVEPNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTISC 349
           V+ +  LF ++   G+E N+VSW  +IA  +QNG   E++ +   M   G  P+  TI C
Sbjct: 332 VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPC 391

Query: 348 VLPVVGDLQDSKMGIQIHGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARMD 169
           +LP  G++     G   H + +++G+  D  V  AL+DMY KCG     +  F  +   +
Sbjct: 392 LLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKN 451

Query: 168 LGSCNALVSGLSRNGLVDDALHTFMQFKDQEIELNVVSWTSIIASCTQNG 19
           L   NA+++G + +G   +A+  F   +    + +++S+T ++++C+Q+G
Sbjct: 452 LVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSG 501



 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 49/160 (30%), Positives = 79/160 (49%)
 Frame = -1

Query: 480 EPNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTISCVLPVVGDLQDSKMGIQ 301
           EPN+ S++ LI  F++      ++S   +M + G +PD   +   +     L   K   Q
Sbjct: 76  EPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQ 135

Query: 300 IHGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARMDLGSCNALVSGLSRNGL 121
           +HG     G   D+ V  +LV MY KC    +  RVF  +   D+ S +ALV+  +R G 
Sbjct: 136 VHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGC 195

Query: 120 VDDALHTFMQFKDQEIELNVVSWTSIIASCTQNGKDIEAL 1
           VD+A   F +  D  ++ N++SW  +IA    +G   EA+
Sbjct: 196 VDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAV 235


>ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  235 bits (600), Expect = 3e-60
 Identities = 112/176 (63%), Positives = 140/176 (79%)
 Frame = -1

Query: 528 VDKAKELFEEMTSFGVEPNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTISC 349
           V++AKELF EM S GVEPNLVSWNG++AGF  NG+  E+V +   M  +GF PDG+T+SC
Sbjct: 186 VEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSC 245

Query: 348 VLPVVGDLQDSKMGIQIHGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARMD 169
           VLP VG L+D  +G Q+HGYV+KQGL  D  VV A++DMYGKCGC  EM RVF E+  M+
Sbjct: 246 VLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEME 305

Query: 168 LGSCNALVSGLSRNGLVDDALHTFMQFKDQEIELNVVSWTSIIASCTQNGKDIEAL 1
           +GS NA ++GLSRNG+VD AL  F +FKDQ++ELNVV+WTSIIASC+QNGKD+EAL
Sbjct: 306 IGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEAL 361



 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 51/170 (30%), Positives = 95/170 (55%)
 Frame = -1

Query: 528 VDKAKELFEEMTSFGVEPNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTISC 349
           VD A E+F +     +E N+V+W  +IA  +QNG   E++ +   M + G  P+  TI  
Sbjct: 322 VDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPS 381

Query: 348 VLPVVGDLQDSKMGIQIHGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARMD 169
           ++P  G++     G +IH + +++G+  D  V  AL+DMY KCG     +R F +++ ++
Sbjct: 382 LIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALN 441

Query: 168 LGSCNALVSGLSRNGLVDDALHTFMQFKDQEIELNVVSWTSIIASCTQNG 19
           L S NA++ G + +G   + +  F        + ++V++T ++++C QNG
Sbjct: 442 LVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNG 491



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 42/159 (26%), Positives = 77/159 (48%)
 Frame = -1

Query: 477 PNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTISCVLPVVGDLQDSKMGIQI 298
           P L S++ LI  F ++ +    ++    +H    +PD   +   +     L+    G Q+
Sbjct: 67  PTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQL 126

Query: 297 HGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARMDLGSCNALVSGLSRNGLV 118
           H +    G   D+ V  +L  MY KC    + +++F  +   D+   +A+++G SR GLV
Sbjct: 127 HAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLV 186

Query: 117 DDALHTFMQFKDQEIELNVVSWTSIIASCTQNGKDIEAL 1
           ++A   F + +   +E N+VSW  ++A    NG   EA+
Sbjct: 187 EEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAV 225


>ref|XP_002528570.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532014|gb|EEF33825.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 542

 Score =  227 bits (578), Expect = 9e-58
 Identities = 110/177 (62%), Positives = 133/177 (75%)
 Frame = -1

Query: 531 CVDKAKELFEEMTSFGVEPNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTIS 352
           C+ +  ELF +    GVE NL+SWNG+IAGFN + +  ++V +   MH E F PDGT+IS
Sbjct: 184 CIGETMELFSKRGDLGVELNLISWNGMIAGFNHSRHHLDAVIIFQNMHCEEFKPDGTSIS 243

Query: 351 CVLPVVGDLQDSKMGIQIHGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARM 172
            VL  VGDL+   MG QIHGYV+KQGL  D CVV AL+DMYGKC C  ++  VF E+  M
Sbjct: 244 SVLSAVGDLKMLDMGFQIHGYVIKQGLCQDKCVVSALIDMYGKCACTMKISEVFDEMYHM 303

Query: 171 DLGSCNALVSGLSRNGLVDDALHTFMQFKDQEIELNVVSWTSIIASCTQNGKDIEAL 1
           D+G+CNALV+GLSRNGLVD AL  F +FKDQ +ELNVVSWTSIIASC+QNGKDIEAL
Sbjct: 304 DVGACNALVTGLSRNGLVDKALQVFRRFKDQGMELNVVSWTSIIASCSQNGKDIEAL 360



 Score =  102 bits (255), Expect = 3e-20
 Identities = 58/174 (33%), Positives = 94/174 (54%)
 Frame = -1

Query: 528 VDKAKELFEEMTSFGVEPNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTISC 349
           VDKA ++F      G+E N+VSW  +IA  +QNG   E++ +   M   G  P+  TI C
Sbjct: 321 VDKALQVFRRFKDQGMELNVVSWTSIIASCSQNGKDIEALELFREMQVVGVKPNAVTIPC 380

Query: 348 VLPVVGDLQDSKMGIQIHGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARMD 169
           +LP  G++     G   H + +K G+  +  V  ALVDMY KCG     +  F  +   +
Sbjct: 381 LLPACGNIAALMHGKAAHCFSLKSGISSNVYVGSALVDMYAKCGRIHISRLCFDIMPTRN 440

Query: 168 LGSCNALVSGLSRNGLVDDALHTFMQFKDQEIELNVVSWTSIIASCTQNGKDIE 7
           L S NAL++G + +G   +A+  F + +    + + VS+ S++++C+Q GK  E
Sbjct: 441 LVSWNALMAGYAMHGQTKEAISIFQRMQRSGQKPDFVSFISVLSACSQGGKTNE 494



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 42/160 (26%), Positives = 80/160 (50%)
 Frame = -1

Query: 480 EPNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTISCVLPVVGDLQDSKMGIQ 301
           E +  S+  L   F  +    + + +  +M S+GF+ D   +  V+     L   K   Q
Sbjct: 65  ESSFQSFYTLFNEFTNHNQFGQVIRLSSQMLSQGFLLDRHVLPSVIKACAGLSFLKTAKQ 124

Query: 300 IHGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARMDLGSCNALVSGLSRNGL 121
           +H      G   D+ V+ +LV MY KC    +  +VF +L++ D+ + +AL++G +R G 
Sbjct: 125 VHCMASVSGFGSDSRVLSSLVHMYIKCNRLKDAHKVFDKLSQPDVVAYSALLAGYARRGC 184

Query: 120 VDDALHTFMQFKDQEIELNVVSWTSIIASCTQNGKDIEAL 1
           + + +  F +  D  +ELN++SW  +IA    +   ++A+
Sbjct: 185 IGETMELFSKRGDLGVELNLISWNGMIAGFNHSRHHLDAV 224


>ref|XP_002301973.1| predicted protein [Populus trichocarpa] gi|222843699|gb|EEE81246.1|
           predicted protein [Populus trichocarpa]
          Length = 716

 Score =  214 bits (546), Expect = 5e-54
 Identities = 108/176 (61%), Positives = 132/176 (75%)
 Frame = -1

Query: 528 VDKAKELFEEMTSFGVEPNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTISC 349
           V + KELF +    GVE NLVSWNG+I+GFN++G   ++V +   MH EG  PDGT++S 
Sbjct: 156 VKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSS 215

Query: 348 VLPVVGDLQDSKMGIQIHGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARMD 169
           VLP VGDL    MGIQIH YV+KQGL  D  VV AL+DMYGKC C  EM  VF E+  +D
Sbjct: 216 VLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVD 275

Query: 168 LGSCNALVSGLSRNGLVDDALHTFMQFKDQEIELNVVSWTSIIASCTQNGKDIEAL 1
           +G+CNALV+GLSRNGLVD+AL  F QFK   ++LNVVSWTS+IASC+QNGKD+EAL
Sbjct: 276 VGACNALVTGLSRNGLVDNALEVFKQFKG--MDLNVVSWTSMIASCSQNGKDMEAL 329



 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 55/170 (32%), Positives = 94/170 (55%)
 Frame = -1

Query: 528 VDKAKELFEEMTSFGVEPNLVSWNGLIAGFNQNGYLSESVSVLCRMHSEGFVPDGTTISC 349
           VD A E+F++    G++ N+VSW  +IA  +QNG   E++ +   M  EG  P+  TI C
Sbjct: 292 VDNALEVFKQFK--GMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPC 349

Query: 348 VLPVVGDLQDSKMGIQIHGYVVKQGLQGDNCVVCALVDMYGKCGCPFEMKRVFYELARMD 169
           +LP  G++     G   H + ++ G+  D  V  AL+DMY KCG     +  F  +   +
Sbjct: 350 LLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRN 409

Query: 168 LGSCNALVSGLSRNGLVDDALHTFMQFKDQEIELNVVSWTSIIASCTQNG 19
           L S N+L++G + +G   +A++ F   +    + + VS+T ++++CTQ G
Sbjct: 410 LVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGG 459



 Score = 71.6 bits (174), Expect = 7e-11
 Identities = 40/147 (27%), Positives = 77/147 (52%)
 Frame = -1

Query: 441 FNQNGYLSESVSVLCRMHSEGFVPDGTTISCVLPVVGDLQDSKMGIQIHGYVVKQGLQGD 262
           F++  +    + V   M ++G VPD   +  V+     L   + G Q+H + +  GL  D
Sbjct: 49  FSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLD 108

Query: 261 NCVVCALVDMYGKCGCPFEMKRVFYELARMDLGSCNALVSGLSRNGLVDDALHTFMQFKD 82
           + V+ +L+ MY +     + + VF +L +  + + +AL+S  +R G V +    F Q +D
Sbjct: 109 SVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRD 168

Query: 81  QEIELNVVSWTSIIASCTQNGKDIEAL 1
             +ELN+VSW  +I+   ++G  ++A+
Sbjct: 169 LGVELNLVSWNGMISGFNRSGSYLDAV 195