BLASTX nr result
ID: Coptis24_contig00028086
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00028086
(728 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 198 4e-52
ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containi... 198 4e-52
ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containi... 189 4e-51
ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containi... 189 2e-49
gb|ACU21163.1| unknown [Glycine max] 189 2e-49
>ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g25270, chloroplastic-like [Cucumis sativus]
Length = 489
Score = 198 bits (504), Expect(2) = 4e-52
Identities = 101/168 (60%), Positives = 121/168 (72%)
Frame = +2
Query: 149 ITYPKSPPTPLLIQTPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCFHTQ 328
+++PKS PTPLLI P Q+K QALDA++ D++ SI+ G+ ID EIFSSLLE C+ Q
Sbjct: 10 LSFPKSSPTPLLIH-PKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQ 68
Query: 329 SINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPWNSL 508
+I+HGI++H LIP N G +E AHQVFDEM R+ SAF WNSL
Sbjct: 69 AIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSL 128
Query: 509 ISGYAELGRYEDALALYFQMEEEGVELDQFTFPRVLKACAGLGSIRVG 652
ISGYAELG YEDALALYFQMEEEGVE D FTFPRVLKAC G+GSI++G
Sbjct: 129 ISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIG 176
Score = 32.7 bits (73), Expect(2) = 4e-52
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +1
Query: 652 EAVQRDIVRCCFVLDGFVLNALVDM 726
EAV R +VR F D FVLNALVDM
Sbjct: 177 EAVHRHVVRSGFAGDVFVLNALVDM 201
>ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Cucumis sativus]
Length = 489
Score = 198 bits (504), Expect(2) = 4e-52
Identities = 101/168 (60%), Positives = 121/168 (72%)
Frame = +2
Query: 149 ITYPKSPPTPLLIQTPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCFHTQ 328
+++PKS PTPLLI P Q+K QALDA++ D++ SI+ G+ ID EIFSSLLE C+ Q
Sbjct: 10 LSFPKSSPTPLLIH-PKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQ 68
Query: 329 SINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPWNSL 508
+I+HGI++H LIP N G +E AHQVFDEM R+ SAF WNSL
Sbjct: 69 AIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSL 128
Query: 509 ISGYAELGRYEDALALYFQMEEEGVELDQFTFPRVLKACAGLGSIRVG 652
ISGYAELG YEDALALYFQMEEEGVE D FTFPRVLKAC G+GSI++G
Sbjct: 129 ISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIG 176
Score = 32.7 bits (73), Expect(2) = 4e-52
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +1
Query: 652 EAVQRDIVRCCFVLDGFVLNALVDM 726
EAV R +VR F D FVLNALVDM
Sbjct: 177 EAVHRHVVRSGFAGDVFVLNALVDM 201
>ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic [Vitis vinifera]
gi|296084180|emb|CBI24568.3| unnamed protein product
[Vitis vinifera]
Length = 516
Score = 189 bits (481), Expect(2) = 4e-51
Identities = 96/169 (56%), Positives = 120/169 (71%)
Frame = +2
Query: 146 SITYPKSPPTPLLIQTPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCFHT 325
++ +PKS PTPLLI + TK QAL+A+++D+Q SI GI +D +IFSSLLETCF
Sbjct: 34 NLVFPKSSPTPLLINHKPRN-HTKLQALEALLRDLQASIQDGITVDAQIFSSLLETCFQL 92
Query: 326 QSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPWNS 505
Q+ +HGI++H LIP + G IE AH++FD+M +R+ SAF WNS
Sbjct: 93 QAFDHGIRIHRLIPTSLLRKSVALSSKLLRLYASIGRIEEAHRLFDQMSRRNRSAFAWNS 152
Query: 506 LISGYAELGRYEDALALYFQMEEEGVELDQFTFPRVLKACAGLGSIRVG 652
LISGYAELG YEDA+ALYFQMEEEGV D+FTFPRVLKAC G+GSI VG
Sbjct: 153 LISGYAELGLYEDAMALYFQMEEEGVVPDRFTFPRVLKACGGIGSISVG 201
Score = 38.1 bits (87), Expect(2) = 4e-51
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +1
Query: 652 EAVQRDIVRCCFVLDGFVLNALVDM 726
E V R +VRC F DGFVLNALVDM
Sbjct: 202 EEVHRHVVRCGFADDGFVLNALVDM 226
>ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Glycine max]
Length = 526
Score = 189 bits (479), Expect(2) = 2e-49
Identities = 91/171 (53%), Positives = 123/171 (71%), Gaps = 1/171 (0%)
Frame = +2
Query: 143 NSITYPKSPPTPLLIQ-TPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCF 319
N +++PK TPLLI P+ P+TK +AL+ ++KD++ S+ +GI ID EI++SLLETC+
Sbjct: 44 NGLSFPKPKSTPLLIHHRPH--PKTKLEALEQVVKDLEASVEKGIKIDPEIYASLLETCY 101
Query: 320 HTQSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPW 499
Q+I HGI++H LIP + CG ++ AH +FD+M KRD SAFPW
Sbjct: 102 RFQAILHGIRVHRLIPTSLLHKNVGISSKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPW 161
Query: 500 NSLISGYAELGRYEDALALYFQMEEEGVELDQFTFPRVLKACAGLGSIRVG 652
NSLISGYA++G Y++A+ALYFQM EEGVE D FTFPRVLK CAG+GS++VG
Sbjct: 162 NSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIGSVQVG 212
Score = 33.5 bits (75), Expect(2) = 2e-49
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 652 EAVQRDIVRCCFVLDGFVLNALVDM 726
E V R +R F DGF+LNALVDM
Sbjct: 213 EEVHRHAIRAGFAADGFILNALVDM 237
>gb|ACU21163.1| unknown [Glycine max]
Length = 481
Score = 189 bits (479), Expect(2) = 2e-49
Identities = 91/171 (53%), Positives = 123/171 (71%), Gaps = 1/171 (0%)
Frame = +2
Query: 143 NSITYPKSPPTPLLIQ-TPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCF 319
N +++PK TPLLI P+ P+TK +AL+ ++KD++ S+ +GI ID EI++SLLETC+
Sbjct: 44 NGLSFPKPKSTPLLIHHRPH--PKTKLEALEQVVKDLEASVEKGIKIDPEIYASLLETCY 101
Query: 320 HTQSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPW 499
Q+I HGI++H LIP + CG ++ AH +FD+M KRD SAFPW
Sbjct: 102 RFQAILHGIRVHRLIPTSLLHKNVGISSKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPW 161
Query: 500 NSLISGYAELGRYEDALALYFQMEEEGVELDQFTFPRVLKACAGLGSIRVG 652
NSLISGYA++G Y++A+ALYFQM EEGVE D FTFPRVLK CAG+GS++VG
Sbjct: 162 NSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIGSVQVG 212
Score = 33.5 bits (75), Expect(2) = 2e-49
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 652 EAVQRDIVRCCFVLDGFVLNALVDM 726
E V R +R F DGF+LNALVDM
Sbjct: 213 EEVHRHAIRAGFAADGFILNALVDM 237