BLASTX nr result

ID: Coptis24_contig00028048 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028048
         (534 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525677.1| conserved hypothetical protein [Ricinus comm...   296   2e-78
ref|XP_002319731.1| predicted protein [Populus trichocarpa] gi|2...   293   8e-78
ref|XP_002276331.1| PREDICTED: uncharacterized protein LOC100253...   293   8e-78
emb|CAN63720.1| hypothetical protein VITISV_009775 [Vitis vinifera]   293   8e-78
ref|XP_002319730.1| predicted protein [Populus trichocarpa] gi|2...   287   8e-76

>ref|XP_002525677.1| conserved hypothetical protein [Ricinus communis]
            gi|223534977|gb|EEF36660.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1000

 Score =  296 bits (757), Expect = 2e-78
 Identities = 137/175 (78%), Positives = 160/175 (91%)
 Frame = +3

Query: 6    GKLRIRLSTLDANRVYMNWYSLTVLQPGGGKKMGEIQLAVRFSSSSWMNLLQSYTTPMLP 185
            GK+RIRLSTLD NRVY+N YSLTVL PGG K+MGEI++A+RFS SSW+ L+Q+YTTPMLP
Sbjct: 679  GKVRIRLSTLDTNRVYLNSYSLTVLLPGGAKRMGEIEIALRFSCSSWLGLIQAYTTPMLP 738

Query: 186  RMHYVKPLGAAQQDILRHTAMKIVTARLARSEPPMGQEVVQFMLDTDTHVWSMRRTKANW 365
            RMHYV PLG AQQDILRHTAM+IVTARLARSEP +GQEVVQFMLD+DTH+WSMRR+KANW
Sbjct: 739  RMHYVLPLGPAQQDILRHTAMRIVTARLARSEPALGQEVVQFMLDSDTHMWSMRRSKANW 798

Query: 366  FRIVGCLSRAAEFARWLDGIRTWAYPSATVLVHALLVSIVLCPHLVLPTAFIYAF 530
            FR+VGCL+RAA  ARWLDGIRTWA+P  +VL+H LLV++VLCPHL+LPT F+YAF
Sbjct: 799  FRVVGCLTRAATLARWLDGIRTWAHPPTSVLLHILLVAVVLCPHLLLPTVFMYAF 853


>ref|XP_002319731.1| predicted protein [Populus trichocarpa] gi|222858107|gb|EEE95654.1|
            predicted protein [Populus trichocarpa]
          Length = 993

 Score =  293 bits (751), Expect = 8e-78
 Identities = 133/175 (76%), Positives = 158/175 (90%)
 Frame = +3

Query: 6    GKLRIRLSTLDANRVYMNWYSLTVLQPGGGKKMGEIQLAVRFSSSSWMNLLQSYTTPMLP 185
            GK+RIRLSTLD NRVY+N YSLTVL P G KKMGEI++AVRFS SSW++L+Q+YT+PMLP
Sbjct: 672  GKVRIRLSTLDTNRVYLNQYSLTVLLPSGAKKMGEIEIAVRFSCSSWLSLIQAYTSPMLP 731

Query: 186  RMHYVKPLGAAQQDILRHTAMKIVTARLARSEPPMGQEVVQFMLDTDTHVWSMRRTKANW 365
            RMHYVKPLG AQQDILRHTAM++VTARL RSEPP+GQEVVQFMLD+DTH+WSMRR+KANW
Sbjct: 732  RMHYVKPLGPAQQDILRHTAMRLVTARLTRSEPPLGQEVVQFMLDSDTHMWSMRRSKANW 791

Query: 366  FRIVGCLSRAAEFARWLDGIRTWAYPSATVLVHALLVSIVLCPHLVLPTAFIYAF 530
            FR+VGCL+  A  ARW++GIRTW +P  T+L+H LLV++VLCPHLVLPT F+YAF
Sbjct: 792  FRVVGCLTHVATLARWIEGIRTWVHPPTTILMHVLLVAVVLCPHLVLPTIFMYAF 846


>ref|XP_002276331.1| PREDICTED: uncharacterized protein LOC100253604 [Vitis vinifera]
          Length = 996

 Score =  293 bits (751), Expect = 8e-78
 Identities = 134/176 (76%), Positives = 158/176 (89%)
 Frame = +3

Query: 6    GKLRIRLSTLDANRVYMNWYSLTVLQPGGGKKMGEIQLAVRFSSSSWMNLLQSYTTPMLP 185
            GK+R+RLSTLD NRVY N YSLTVL PGG K+MGEI++AVRFS SSW+NL+Q+Y +PMLP
Sbjct: 675  GKIRVRLSTLDTNRVYTNSYSLTVLLPGGSKRMGEIEIAVRFSCSSWLNLIQAYASPMLP 734

Query: 186  RMHYVKPLGAAQQDILRHTAMKIVTARLARSEPPMGQEVVQFMLDTDTHVWSMRRTKANW 365
            RMHYV+PLG AQQDILRHTAM+IVTARLARSEP +GQEVVQ+MLD+DTHVWSMRR+KANW
Sbjct: 735  RMHYVRPLGPAQQDILRHTAMRIVTARLARSEPALGQEVVQYMLDSDTHVWSMRRSKANW 794

Query: 366  FRIVGCLSRAAEFARWLDGIRTWAYPSATVLVHALLVSIVLCPHLVLPTAFIYAFF 533
            FR++G LSRAA  ARWLDGIRTW +P  T+L+H  LV+++LCPHLVLPT F+YAFF
Sbjct: 795  FRVLGWLSRAATLARWLDGIRTWVHPPTTILMHVFLVAVILCPHLVLPTVFMYAFF 850


>emb|CAN63720.1| hypothetical protein VITISV_009775 [Vitis vinifera]
          Length = 977

 Score =  293 bits (751), Expect = 8e-78
 Identities = 134/176 (76%), Positives = 158/176 (89%)
 Frame = +3

Query: 6    GKLRIRLSTLDANRVYMNWYSLTVLQPGGGKKMGEIQLAVRFSSSSWMNLLQSYTTPMLP 185
            GK+R+RLSTLD NRVY N YSLTVL PGG K+MGEI++AVRFS SSW+NL+Q+Y +PMLP
Sbjct: 656  GKIRVRLSTLDTNRVYTNSYSLTVLLPGGSKRMGEIEIAVRFSCSSWLNLIQAYASPMLP 715

Query: 186  RMHYVKPLGAAQQDILRHTAMKIVTARLARSEPPMGQEVVQFMLDTDTHVWSMRRTKANW 365
            RMHYV+PLG AQQDILRHTAM+IVTARLARSEP +GQEVVQ+MLD+DTHVWSMRR+KANW
Sbjct: 716  RMHYVRPLGPAQQDILRHTAMRIVTARLARSEPALGQEVVQYMLDSDTHVWSMRRSKANW 775

Query: 366  FRIVGCLSRAAEFARWLDGIRTWAYPSATVLVHALLVSIVLCPHLVLPTAFIYAFF 533
            FR++G LSRAA  ARWLDGIRTW +P  T+L+H  LV+++LCPHLVLPT F+YAFF
Sbjct: 776  FRVLGWLSRAATLARWLDGIRTWVHPPTTILMHVFLVAVILCPHLVLPTVFMYAFF 831


>ref|XP_002319730.1| predicted protein [Populus trichocarpa] gi|222858106|gb|EEE95653.1|
            predicted protein [Populus trichocarpa]
          Length = 996

 Score =  287 bits (734), Expect = 8e-76
 Identities = 129/175 (73%), Positives = 155/175 (88%)
 Frame = +3

Query: 6    GKLRIRLSTLDANRVYMNWYSLTVLQPGGGKKMGEIQLAVRFSSSSWMNLLQSYTTPMLP 185
            GK+RIRLSTLD NRVY N YSLTV+ P G KKMGEI++A+RFS SSW++L+Q+YT+PMLP
Sbjct: 675  GKVRIRLSTLDTNRVYFNQYSLTVVLPSGAKKMGEIEIAIRFSCSSWLSLIQAYTSPMLP 734

Query: 186  RMHYVKPLGAAQQDILRHTAMKIVTARLARSEPPMGQEVVQFMLDTDTHVWSMRRTKANW 365
            RMHYVKP+G  QQDILRHTAM++VT RL RSEPP+GQEVVQFMLD+DTH+WSMRR+KANW
Sbjct: 735  RMHYVKPMGPTQQDILRHTAMRLVTTRLTRSEPPLGQEVVQFMLDSDTHMWSMRRSKANW 794

Query: 366  FRIVGCLSRAAEFARWLDGIRTWAYPSATVLVHALLVSIVLCPHLVLPTAFIYAF 530
            FR+VGCL+R A  ARW +GIRTW +P  +VL+H LLV++VLCPHLVLPT F+YAF
Sbjct: 795  FRVVGCLTRVATLARWTEGIRTWVHPPTSVLMHVLLVAVVLCPHLVLPTIFMYAF 849


Top