BLASTX nr result
ID: Coptis24_contig00028007
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00028007
(378 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002873947.1| hypothetical protein ARALYDRAFT_488831 [Arab... 207 5e-52
ref|XP_002279847.2| PREDICTED: uncharacterized protein LOC100248... 207 9e-52
emb|CBI24230.3| unnamed protein product [Vitis vinifera] 207 9e-52
ref|NP_001190338.1| regulator of chromosome condensation-like pr... 206 1e-51
ref|NP_197443.3| regulator of chromosome condensation-like prote... 206 1e-51
>ref|XP_002873947.1| hypothetical protein ARALYDRAFT_488831 [Arabidopsis lyrata subsp.
lyrata] gi|297319784|gb|EFH50206.1| hypothetical protein
ARALYDRAFT_488831 [Arabidopsis lyrata subsp. lyrata]
Length = 1100
Score = 207 bits (528), Expect = 5e-52
Identities = 96/126 (76%), Positives = 113/126 (89%)
Frame = +1
Query: 1 RLGHGDKEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNPDAD 180
RLGHGDKEP+LVP CVA+LV+ + QVACG+++TV+LTTSG VYTMGS YGQLGNP AD
Sbjct: 507 RLGHGDKEPKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPHAD 566
Query: 181 GKLPSCVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDIDDKYTPTLV 360
GK+P+ VEGK+ SFV+EIACG+YHVAVLTS+TEVYTWGKG+NGRLGHGD DD+ +PTLV
Sbjct: 567 GKVPTRVEGKLHKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDADDRNSPTLV 626
Query: 361 ESLKDK 378
ESLKDK
Sbjct: 627 ESLKDK 632
Score = 80.9 bits (198), Expect = 1e-13
Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Frame = +1
Query: 1 RLGHGDKEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNP-DA 177
RLGHG P + +L ++ VACG + ++T SG +YT G +G LG+ +
Sbjct: 338 RLGHGVDSNVQHPKLIDALSTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEV 397
Query: 178 DGKLPSCVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDIDDKYTPTL 357
+P V + V IACG YH AV+TS +++T+G G G LGHGD + P
Sbjct: 398 SHWVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPRE 457
Query: 358 VESLK 372
V+SLK
Sbjct: 458 VDSLK 462
Score = 71.2 bits (173), Expect = 8e-11
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Frame = +1
Query: 19 KEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNP-DADGKLPS 195
K L+P + S + + + +ACG V +T G ++ G + G+LG+ D++ + P
Sbjct: 292 KMDSLLPKALESTIVLDVQYIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPK 351
Query: 196 CVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDIDDKYTPTLVESLKD 375
++ +S + ++ +ACG YH +T ++YTWGKG G LGHG+ + P V L +
Sbjct: 352 LIDA-LSTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLME 410
Score = 70.5 bits (171), Expect = 1e-10
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Frame = +1
Query: 4 LGHGDKEPRLVPACVASLVD-VSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNPDAD 180
LGHG++ VP V L++ + +S +ACG T +T++G+++T G +G LG+ D
Sbjct: 391 LGHGNEVSHWVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRK 450
Query: 181 GKLPSCVEGKISDSFVDEIACGSYHVAVLT------------SKTEVYTWGKGANGRLGH 324
+ ACG +H A + S +++TWG G RLGH
Sbjct: 451 SVFIPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGH 510
Query: 325 GDIDDKYTPTLVESL 369
GD + K PT V +L
Sbjct: 511 GDKEPKLVPTCVAAL 525
>ref|XP_002279847.2| PREDICTED: uncharacterized protein LOC100248282 isoform 1 [Vitis
vinifera]
Length = 1107
Score = 207 bits (526), Expect = 9e-52
Identities = 96/126 (76%), Positives = 113/126 (89%)
Frame = +1
Query: 1 RLGHGDKEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNPDAD 180
RLGHGDKE +LVP CVA+LVD + +VACG+++TV+LTTSG VYTMGS YGQLGNP AD
Sbjct: 514 RLGHGDKEAKLVPTCVAALVDPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQAD 573
Query: 181 GKLPSCVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDIDDKYTPTLV 360
GKLP+ VEGK++ SFV+EIACG+YHVAVLTS+TEVYTWGKGANGRLGHGD DD+ +PTLV
Sbjct: 574 GKLPTRVEGKLAKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLV 633
Query: 361 ESLKDK 378
E+LKDK
Sbjct: 634 EALKDK 639
Score = 86.3 bits (212), Expect = 2e-15
Identities = 51/127 (40%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Frame = +1
Query: 1 RLGHGDKEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAY--GQLGNP- 171
RLGHG L P + SL + ++ VACG T ++T SG +YT G Y G LG+
Sbjct: 343 RLGHGVDSDVLHPKLIDSLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGN 402
Query: 172 DADGKLPSCVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDIDDKYTP 351
+ +P V G + V I+CG +H AV+TS +++T+G G G LGHGD P
Sbjct: 403 EVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDTKSVSKP 462
Query: 352 TLVESLK 372
VESLK
Sbjct: 463 REVESLK 469
Score = 72.0 bits (175), Expect = 5e-11
Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Frame = +1
Query: 4 LGHGDKEPRLVPACV-ASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNPDAD 180
LGHG++ VP V L + +S ++CG T +T+SG+++T G +G LG+ D
Sbjct: 398 LGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDTK 457
Query: 181 G-KLPSCVEGKISDSFVDEIACGSYHVAVLT------------SKTEVYTWGKGANGRLG 321
P VE V ACG +H A + S +++TWG G GRLG
Sbjct: 458 SVSKPREVESLKGHRTVIS-ACGVWHTAAVVEIMVGNPSSSNCSSGKLFTWGDGDKGRLG 516
Query: 322 HGDIDDKYTPTLVESLKD 375
HGD + K PT V +L D
Sbjct: 517 HGDKEAKLVPTCVAALVD 534
Score = 68.6 bits (166), Expect = 5e-10
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Frame = +1
Query: 13 GDKEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNP-DADGKL 189
G K L+P + S V + + +ACG +T G +++ G + G+LG+ D+D
Sbjct: 295 GMKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLH 354
Query: 190 PSCVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGAN--GRLGHGDIDDKYTPTLV 360
P ++ +S++ ++ +ACG YH +T ++YTWG G G LGHG+ + P V
Sbjct: 355 PKLIDS-LSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRV 412
Score = 56.6 bits (135), Expect = 2e-06
Identities = 29/79 (36%), Positives = 42/79 (53%)
Frame = +1
Query: 139 GSTAYGQLGNPDADGKLPSCVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGANGRL 318
GS G D LP +E + V IACG H A++T + E+++WG+ + GRL
Sbjct: 286 GSHRVGSCFGMKMDSLLPKALESAVVLD-VQNIACGGRHAALVTKQGEIFSWGEESGGRL 344
Query: 319 GHGDIDDKYTPTLVESLKD 375
GHG D P L++SL +
Sbjct: 345 GHGVDSDVLHPKLIDSLSN 363
>emb|CBI24230.3| unnamed protein product [Vitis vinifera]
Length = 953
Score = 207 bits (526), Expect = 9e-52
Identities = 96/126 (76%), Positives = 113/126 (89%)
Frame = +1
Query: 1 RLGHGDKEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNPDAD 180
RLGHGDKE +LVP CVA+LVD + +VACG+++TV+LTTSG VYTMGS YGQLGNP AD
Sbjct: 360 RLGHGDKEAKLVPTCVAALVDPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQAD 419
Query: 181 GKLPSCVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDIDDKYTPTLV 360
GKLP+ VEGK++ SFV+EIACG+YHVAVLTS+TEVYTWGKGANGRLGHGD DD+ +PTLV
Sbjct: 420 GKLPTRVEGKLAKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLV 479
Query: 361 ESLKDK 378
E+LKDK
Sbjct: 480 EALKDK 485
Score = 70.1 bits (170), Expect = 2e-10
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 34/155 (21%)
Frame = +1
Query: 13 GDKEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNP-DADGKL 189
G K L+P + S V + + +ACG +T G +++ G + G+LG+ D+D
Sbjct: 227 GMKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLH 286
Query: 190 PSCVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGA--------------------- 306
P ++ +S++ ++ +ACG YH +T ++YTWG G
Sbjct: 287 PKLIDS-LSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNFVFQNPGKWSPSRATALNC 345
Query: 307 ------------NGRLGHGDIDDKYTPTLVESLKD 375
GRLGHGD + K PT V +L D
Sbjct: 346 SSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVD 380
>ref|NP_001190338.1| regulator of chromosome condensation-like protein with FYVE zinc
finger domain [Arabidopsis thaliana]
gi|332005321|gb|AED92704.1| regulator of chromosome
condensation-like protein with FYVE zinc finger domain
[Arabidopsis thaliana]
Length = 1139
Score = 206 bits (525), Expect = 1e-51
Identities = 95/126 (75%), Positives = 113/126 (89%)
Frame = +1
Query: 1 RLGHGDKEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNPDAD 180
RLGHGDKEP+LVP CVA+LV+ + QVACG+++TV+LTTSG VYTMGS YGQLGNP AD
Sbjct: 546 RLGHGDKEPKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPHAD 605
Query: 181 GKLPSCVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDIDDKYTPTLV 360
GK+P+ V+GK+ SFV+EIACG+YHVAVLTS+TEVYTWGKG+NGRLGHGD DD+ +PTLV
Sbjct: 606 GKVPTRVDGKLHKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDADDRNSPTLV 665
Query: 361 ESLKDK 378
ESLKDK
Sbjct: 666 ESLKDK 671
Score = 80.5 bits (197), Expect = 1e-13
Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Frame = +1
Query: 1 RLGHGDKEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNP-DA 177
RLGHG P + +L ++ VACG + ++T SG +YT G +G LG+ +
Sbjct: 377 RLGHGVDSNVQHPKLIDALNTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEV 436
Query: 178 DGKLPSCVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDIDDKYTPTL 357
+P V + V IACG YH AV+TS +++T+G G G LGHGD + P
Sbjct: 437 SHWVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPRE 496
Query: 358 VESLK 372
V+SLK
Sbjct: 497 VDSLK 501
Score = 70.5 bits (171), Expect = 1e-10
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Frame = +1
Query: 19 KEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNP-DADGKLPS 195
K L+P + S + + + +ACG V +T G ++ G + G+LG+ D++ + P
Sbjct: 331 KMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPK 390
Query: 196 CVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDIDDKYTPTLVESLKD 375
++ ++ + ++ +ACG YH +T ++YTWGKG G LGHG+ + P V L +
Sbjct: 391 LIDA-LNTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLME 449
Score = 70.5 bits (171), Expect = 1e-10
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Frame = +1
Query: 4 LGHGDKEPRLVPACVASLVD-VSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNPDAD 180
LGHG++ VP V L++ + +S +ACG T +T++G+++T G +G LG+ D
Sbjct: 430 LGHGNEVSHWVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRK 489
Query: 181 GKLPSCVEGKISDSFVDEIACGSYHVAVLT------------SKTEVYTWGKGANGRLGH 324
+ ACG +H A + S +++TWG G RLGH
Sbjct: 490 SVFIPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGH 549
Query: 325 GDIDDKYTPTLVESL 369
GD + K PT V +L
Sbjct: 550 GDKEPKLVPTCVAAL 564
>ref|NP_197443.3| regulator of chromosome condensation-like protein with FYVE zinc
finger domain [Arabidopsis thaliana]
gi|332005320|gb|AED92703.1| regulator of chromosome
condensation-like protein with FYVE zinc finger domain
[Arabidopsis thaliana]
Length = 1105
Score = 206 bits (525), Expect = 1e-51
Identities = 95/126 (75%), Positives = 113/126 (89%)
Frame = +1
Query: 1 RLGHGDKEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNPDAD 180
RLGHGDKEP+LVP CVA+LV+ + QVACG+++TV+LTTSG VYTMGS YGQLGNP AD
Sbjct: 512 RLGHGDKEPKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPHAD 571
Query: 181 GKLPSCVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDIDDKYTPTLV 360
GK+P+ V+GK+ SFV+EIACG+YHVAVLTS+TEVYTWGKG+NGRLGHGD DD+ +PTLV
Sbjct: 572 GKVPTRVDGKLHKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDADDRNSPTLV 631
Query: 361 ESLKDK 378
ESLKDK
Sbjct: 632 ESLKDK 637
Score = 80.5 bits (197), Expect = 1e-13
Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Frame = +1
Query: 1 RLGHGDKEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNP-DA 177
RLGHG P + +L ++ VACG + ++T SG +YT G +G LG+ +
Sbjct: 343 RLGHGVDSNVQHPKLIDALNTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEV 402
Query: 178 DGKLPSCVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDIDDKYTPTL 357
+P V + V IACG YH AV+TS +++T+G G G LGHGD + P
Sbjct: 403 SHWVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPRE 462
Query: 358 VESLK 372
V+SLK
Sbjct: 463 VDSLK 467
Score = 70.5 bits (171), Expect = 1e-10
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Frame = +1
Query: 19 KEPRLVPACVASLVDVSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNP-DADGKLPS 195
K L+P + S + + + +ACG V +T G ++ G + G+LG+ D++ + P
Sbjct: 297 KMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPK 356
Query: 196 CVEGKISDSFVDEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDIDDKYTPTLVESLKD 375
++ ++ + ++ +ACG YH +T ++YTWGKG G LGHG+ + P V L +
Sbjct: 357 LIDA-LNTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLME 415
Score = 70.5 bits (171), Expect = 1e-10
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Frame = +1
Query: 4 LGHGDKEPRLVPACVASLVD-VSLSQVACGNNITVSLTTSGRVYTMGSTAYGQLGNPDAD 180
LGHG++ VP V L++ + +S +ACG T +T++G+++T G +G LG+ D
Sbjct: 396 LGHGNEVSHWVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRK 455
Query: 181 GKLPSCVEGKISDSFVDEIACGSYHVAVLT------------SKTEVYTWGKGANGRLGH 324
+ ACG +H A + S +++TWG G RLGH
Sbjct: 456 SVFIPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGH 515
Query: 325 GDIDDKYTPTLVESL 369
GD + K PT V +L
Sbjct: 516 GDKEPKLVPTCVAAL 530