BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027999
         (1169 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]   583   e-164
ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containi...   582   e-164
ref|XP_002320305.1| predicted protein [Populus trichocarpa] gi|2...   557   e-156
ref|XP_002515292.1| pentatricopeptide repeat-containing protein,...   532   e-149
ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containi...   531   e-148

>emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score =  583 bits (1504), Expect = e-164
 Identities = 273/340 (80%), Positives = 313/340 (92%)
 Frame = +3

Query: 3    YNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDRFPPDMRTYSVLLAGWCKVKNLMEA 182
            YN+ AGVDT N LLD LGRAKLGKEAQALFEKL+DRF P++RTY+VLL GWC++KNL+EA
Sbjct: 332  YNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEA 391

Query: 183  GRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPSPSVRSYTILIRD 362
            GR WNEMIDKG KPDI+AHH MLEGLL+ +++S+AIKLFE+MKAKGPSP+VR+YTILIRD
Sbjct: 392  GRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRD 451

Query: 363  LCKRNKMEEAVKYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGLLKEMKEKGCPPD 542
            LCK+ KM+EAV+YF+EMVD GC  D A+YTCL+ GFGN+K ++KVY LLKEMKEKGCP D
Sbjct: 452  LCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPAD 511

Query: 543  GLTYNALIKLMTNRQMPDDAVRIYKKMIQNGHKPTIHTYNMMMKSYFHLKNYEMGYAVWE 722
            G TYNALIKLMTNRQMPDDAVRIYKKMIQNG +PT+HTYNMMMKSYF+ +NYEMG AVW+
Sbjct: 512  GRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMGCAVWK 571

Query: 723  EMASKGCCPDDNSYIVFVGGLIRHGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAG 902
            EM  KGCCPDDNSYIVF+GGLIRHGRSEEAC+YLEEMIEKGMKAPQLDYNKFAADFSRAG
Sbjct: 572  EMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAG 631

Query: 903  KPNILEELAQKMKFSGKFEVSHVFARWSEMMKKSIKQREP 1022
            KP+ILEELA+KMKF GKFEVS+VFARW+EMMKK +K+R+P
Sbjct: 632  KPDILEELARKMKFEGKFEVSNVFARWAEMMKKRVKRRDP 671


>ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
            mitochondrial-like [Vitis vinifera]
          Length = 679

 Score =  582 bits (1501), Expect = e-164
 Identities = 273/340 (80%), Positives = 312/340 (91%)
 Frame = +3

Query: 3    YNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDRFPPDMRTYSVLLAGWCKVKNLMEA 182
            YN+ AGVDT N LLD LGRAKLGKEAQALFEKL+DRF P++RTY+VLL GWC++KNL+EA
Sbjct: 332  YNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEA 391

Query: 183  GRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPSPSVRSYTILIRD 362
            GR WNEMIDKG KPDI+AHH MLEGLL+ +++S+AIKLFE+MKAKGPSP+VR+YTILIRD
Sbjct: 392  GRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRD 451

Query: 363  LCKRNKMEEAVKYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGLLKEMKEKGCPPD 542
            LCK+ KM+EAV+YF+EMVD GC  D A+YTCL+ GFGN+K ++KVY LLKEMKEKGCP D
Sbjct: 452  LCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPAD 511

Query: 543  GLTYNALIKLMTNRQMPDDAVRIYKKMIQNGHKPTIHTYNMMMKSYFHLKNYEMGYAVWE 722
            G TYNALIKLMTNRQMPDDAVRIYKKMIQNG + T+HTYNMMMKSYF+ +NYEMG AVWE
Sbjct: 512  GRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMGCAVWE 571

Query: 723  EMASKGCCPDDNSYIVFVGGLIRHGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAG 902
            EM  KGCCPDDNSYIVF+GGLIRHGRSEEAC+YLEEMIEKGMKAPQLDYNKFAADFSRAG
Sbjct: 572  EMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAG 631

Query: 903  KPNILEELAQKMKFSGKFEVSHVFARWSEMMKKSIKQREP 1022
            KP+ILEELA+KMKF GKFEVS+VFARW+EMMKK +K+R+P
Sbjct: 632  KPDILEELARKMKFEGKFEVSNVFARWAEMMKKRVKRRDP 671


>ref|XP_002320305.1| predicted protein [Populus trichocarpa] gi|222861078|gb|EEE98620.1|
            predicted protein [Populus trichocarpa]
          Length = 540

 Score =  557 bits (1435), Expect = e-156
 Identities = 262/338 (77%), Positives = 304/338 (89%)
 Frame = +3

Query: 3    YNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDRFPPDMRTYSVLLAGWCKVKNLMEA 182
            + Y+ GV+T N+LLD+LGRAKLGKEAQALF KL+ RF P++RTY+VLL GWC+VKNLMEA
Sbjct: 203  HKYRVGVETINALLDSLGRAKLGKEAQALFGKLEGRFTPNLRTYTVLLNGWCRVKNLMEA 262

Query: 183  GRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPSPSVRSYTILIRD 362
            GR+WNEM+D+G KPDIV H+IMLEGLLR ++ S+AIK FE+MKAKGPSP VRSYTILIRD
Sbjct: 263  GRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPSPDVRSYTILIRD 322

Query: 363  LCKRNKMEEAVKYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGLLKEMKEKGCPPD 542
            LCK+ KM+EAV YF EMVD GC  D A+YTCLM G+GN K ++ VY LLKEMKEKGCPPD
Sbjct: 323  LCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPD 382

Query: 543  GLTYNALIKLMTNRQMPDDAVRIYKKMIQNGHKPTIHTYNMMMKSYFHLKNYEMGYAVWE 722
            G TYNALIKLMT+++MPDDAVRIYKKMIQNG +P+IH+YNM+MKSYF ++NYEMG+AVW+
Sbjct: 383  GKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWD 442

Query: 723  EMASKGCCPDDNSYIVFVGGLIRHGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAG 902
            EM+ KG CPDDNSY VF+GGLI  GRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAG
Sbjct: 443  EMSKKGFCPDDNSYTVFIGGLISQGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAG 502

Query: 903  KPNILEELAQKMKFSGKFEVSHVFARWSEMMKKSIKQR 1016
            KP+ILEELAQKMKFSGKFEVS+VFARW+EMMKK +K+R
Sbjct: 503  KPDILEELAQKMKFSGKFEVSNVFARWAEMMKKRVKRR 540


>ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545772|gb|EEF47276.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 533

 Score =  532 bits (1371), Expect = e-149
 Identities = 253/339 (74%), Positives = 292/339 (86%)
 Frame = +3

Query: 3    YNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDRFPPDMRTYSVLLAGWCKVKNLMEA 182
            YNYK GV+T N LLD+LGRAKLGKEAQALFE LK RF P++RTY+VLL GWCKVKNLMEA
Sbjct: 192  YNYKVGVETINHLLDSLGRAKLGKEAQALFENLKGRFTPNLRTYTVLLNGWCKVKNLMEA 251

Query: 183  GRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPSPSVRSYTILIRD 362
            G VWNEMIDKG KPDIVAH+IMLEGLLR ++ S+AIKLF +MKAKGPSP VRSYTILIR 
Sbjct: 252  GSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRY 311

Query: 363  LCKRNKMEEAVKYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGLLKEMKEKGCPPD 542
            LC+++KMEEAV+YF EM+D GC  D A+YTCL+ GFGNRK ++ VY LLKEMKE+GCPPD
Sbjct: 312  LCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPD 371

Query: 543  GLTYNALIKLMTNRQMPDDAVRIYKKMIQNGHKPTIHTYNMMMKSYFHLKNYEMGYAVWE 722
            GLTYNALIKLMT  +MPDDA RIYKKM Q+G +PTIHTYNM+MKSYF  +NYEMG AVW+
Sbjct: 372  GLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAVWD 431

Query: 723  EMASKGCCPDDNSYIVFVGGLIRHGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAG 902
            EM+ KG CPDDNSY V +GGLI  GRS EACKYLEEM+EKGMKAPQLDYNKF AD SR G
Sbjct: 432  EMSRKGFCPDDNSYTVLIGGLISQGRSGEACKYLEEMLEKGMKAPQLDYNKFGADLSRGG 491

Query: 903  KPNILEELAQKMKFSGKFEVSHVFARWSEMMKKSIKQRE 1019
             P+ILEELAQ++KFSGKF VS+V A W+ M++K +K+R+
Sbjct: 492  NPDILEELAQRLKFSGKFGVSNVLASWAGMIQKRVKRRD 530



 Score =  101 bits (252), Expect = 3e-19
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 34/291 (11%)
 Frame = +3

Query: 102 KDRFPPDMRTYSVLLAGWCKVKNLMEAGRVWNEMIDKGL--------------------- 218
           K  F  D RTY+ +++   K +       +  EM  KG+                     
Sbjct: 122 KQGFEHDSRTYNSMMSILAKTRQFETVVSMLEEMGGKGVLTMDTFSIAMRAFAAAKERKK 181

Query: 219 -------------KPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPSPSVRSYTILIR 359
                        K  +   + +L+ L R +   EA  LFE +K +  +P++R+YT+L+ 
Sbjct: 182 AVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALFENLKGRF-TPNLRTYTVLLN 240

Query: 360 DLCKRNKMEEAVKYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGLLKEMKEKGCPP 539
             CK   + EA   +NEM+D G   D   +  ++ G    K       L   MK KG  P
Sbjct: 241 GWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSP 300

Query: 540 DGLTYNALIKLMTNRQMPDDAVRIYKKMIQNGHKPTIHTYNMMMKSYFHLKNYEMGYAVW 719
           D  +Y  LI+ +  +   ++AV  +++MI +G KP    Y  ++  + + K  +M Y + 
Sbjct: 301 DVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLL 360

Query: 720 EEMASKGCCPDDNSYIVFVGGLIRHGRSEEACKYLEEMIEKGMKAPQLDYN 872
           +EM  +GC PD  +Y   +  + R    ++A +  ++M + G++     YN
Sbjct: 361 KEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYN 411


>ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
            mitochondrial-like [Cucumis sativus]
            gi|449490811|ref|XP_004158714.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g62470,
            mitochondrial-like [Cucumis sativus]
          Length = 621

 Score =  531 bits (1368), Expect = e-148
 Identities = 250/342 (73%), Positives = 293/342 (85%)
 Frame = +3

Query: 3    YNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDRFPPDMRTYSVLLAGWCKVKNLMEA 182
            Y YK GV+T N LLD+LGRAKLGKEA  +FEKL  RF P+++TY+VLL GWC+V+NLMEA
Sbjct: 272  YKYKVGVETINCLLDSLGRAKLGKEALTIFEKLHGRFTPNLQTYTVLLNGWCRVRNLMEA 331

Query: 183  GRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPSPSVRSYTILIRD 362
            G++WN+MID+  KPDIVAH+ MLEGLLR ++ S+AIKLFE+MKAKGPSP V+SYTIL+RD
Sbjct: 332  GKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILVRD 391

Query: 363  LCKRNKMEEAVKYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGLLKEMKEKGCPPD 542
             CK+ KM+EAV+YF EM   GC  D AIYTCL+ GFGN+K ++ VYGLLKEMK  GCPPD
Sbjct: 392  FCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCPPD 451

Query: 543  GLTYNALIKLMTNRQMPDDAVRIYKKMIQNGHKPTIHTYNMMMKSYFHLKNYEMGYAVWE 722
            G TYNALIKLMTN++MPDDAVRIYKKMI+NG KPT HTY+MMMKSYF  +NYEMG A W+
Sbjct: 452  GKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQTRNYEMGVAAWD 511

Query: 723  EMASKGCCPDDNSYIVFVGGLIRHGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAG 902
            EM  KGCCPDDNSY VF+GGLI  GR  EA KYLEEMIEKGMKAPQLDYNKFAADFSRAG
Sbjct: 512  EMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKGMKAPQLDYNKFAADFSRAG 571

Query: 903  KPNILEELAQKMKFSGKFEVSHVFARWSEMMKKSIKQREPSH 1028
            +P+ILEELAQKMKFSGKFE S+V ARW+EMM+K +K+R P++
Sbjct: 572  RPDILEELAQKMKFSGKFEASNVIARWAEMMRKRVKRRNPTN 613