BLASTX nr result

ID: Coptis24_contig00027995 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027995
         (504 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278511.1| PREDICTED: protein sym-1 [Vitis vinifera] gi...    75   6e-12
ref|XP_002323213.1| predicted protein [Populus trichocarpa] gi|2...    66   3e-09
ref|XP_003624877.1| Protein Mpv17 [Medicago truncatula] gi|35549...    65   8e-09
ref|XP_002308859.1| predicted protein [Populus trichocarpa] gi|2...    65   8e-09
ref|XP_003554094.1| PREDICTED: protein sym-1-like [Glycine max]        64   1e-08

>ref|XP_002278511.1| PREDICTED: protein sym-1 [Vitis vinifera]
           gi|297741716|emb|CBI32848.3| unnamed protein product
           [Vitis vinifera]
          Length = 293

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 62/166 (37%), Positives = 73/166 (43%), Gaps = 1/166 (0%)
 Frame = -1

Query: 498 MAPYSTATLICKSPTLFRSVPHSSPTPFSTLTRKTPAAIPITNKGFNTCSPSSCFHSHAP 319
           MAP +  TL   SP LFR +  S  T +S+     P  I  T + ++TC    C+ SH  
Sbjct: 1   MAP-NPITLTRMSPLLFRFLGFSRNTIYSSRIPTNPIRIS-TVRSYSTCH-FFCYPSH-- 55

Query: 318 SLNYSSHGLSFNDSGRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 139
               SS    F D GRS+                                          
Sbjct: 56  ----SSVRTVFKDLGRSEIGFSKKGSDYFRISAVSDGGSGGTGGFGGFGDGNSGGKSEGS 111

Query: 138 XXXK-WSLLSWYLAALETYPVFTKALTSAILTCVGDLICQLVIDRV 4
                WSLLSWYLA LE YPV TKA+TSA LT VGDLICQLVID+V
Sbjct: 112 GGGGDWSLLSWYLALLEKYPVLTKAITSAFLTLVGDLICQLVIDQV 157


>ref|XP_002323213.1| predicted protein [Populus trichocarpa] gi|222867843|gb|EEF04974.1|
           predicted protein [Populus trichocarpa]
          Length = 264

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 31/41 (75%), Positives = 34/41 (82%)
 Frame = -1

Query: 126 WSLLSWYLAALETYPVFTKALTSAILTCVGDLICQLVIDRV 4
           WS LSWYL  L  YPV TKA+TSAILT +GDLICQLVID+V
Sbjct: 88  WSFLSWYLNLLANYPVLTKAVTSAILTFMGDLICQLVIDQV 128


>ref|XP_003624877.1| Protein Mpv17 [Medicago truncatula] gi|355499892|gb|AES81095.1|
           Protein Mpv17 [Medicago truncatula]
          Length = 241

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 30/41 (73%), Positives = 33/41 (80%)
 Frame = -1

Query: 126 WSLLSWYLAALETYPVFTKALTSAILTCVGDLICQLVIDRV 4
           WS LSWY+A L  YPV  KALTSAIL  +GDLICQLVID+V
Sbjct: 90  WSFLSWYMALLAKYPVPVKALTSAILNLIGDLICQLVIDKV 130


>ref|XP_002308859.1| predicted protein [Populus trichocarpa] gi|222854835|gb|EEE92382.1|
           predicted protein [Populus trichocarpa]
          Length = 286

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 30/40 (75%), Positives = 33/40 (82%)
 Frame = -1

Query: 126 WSLLSWYLAALETYPVFTKALTSAILTCVGDLICQLVIDR 7
           WS LSWYL  L  YPV TKA+TSAILT +GDLICQLVID+
Sbjct: 110 WSFLSWYLNLLAKYPVLTKAVTSAILTLMGDLICQLVIDQ 149


>ref|XP_003554094.1| PREDICTED: protein sym-1-like [Glycine max]
          Length = 277

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 30/41 (73%), Positives = 33/41 (80%)
 Frame = -1

Query: 126 WSLLSWYLAALETYPVFTKALTSAILTCVGDLICQLVIDRV 4
           WS LSWYLA L  YPV  KALTS+IL  +GDLICQLVID+V
Sbjct: 101 WSFLSWYLALLGKYPVAVKALTSSILNLIGDLICQLVIDQV 141


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