BLASTX nr result

ID: Coptis24_contig00027945 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027945
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003604112.1| Synaptic vesicle 2-related protein [Medicago...    77   2e-12
ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protei...    76   3e-12
ref|XP_002310345.1| predicted protein [Populus trichocarpa] gi|2...    76   3e-12
emb|CAN64534.1| hypothetical protein VITISV_042940 [Vitis vinifera]    76   3e-12
ref|XP_002330449.1| predicted protein [Populus trichocarpa] gi|2...    75   6e-12

>ref|XP_003604112.1| Synaptic vesicle 2-related protein [Medicago truncatula]
           gi|355505167|gb|AES86309.1| Synaptic vesicle 2-related
           protein [Medicago truncatula]
          Length = 499

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 38/79 (48%), Positives = 45/79 (56%)
 Frame = +1

Query: 1   VYIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVAVGLVQGCHRTASXXXXXXXXXXSG 180
           VYIYAPEIYP                   M+CPLVAVGLV GCH+TA+          SG
Sbjct: 412 VYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQTAAVLLFIIVALVSG 471

Query: 181 VAVIYFPFETKGCELSDSV 237
           + V++FPFET G EL D+V
Sbjct: 472 ICVVFFPFETMGQELQDTV 490


>ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protein [Vitis vinifera]
           gi|297735684|emb|CBI18371.3| unnamed protein product
           [Vitis vinifera]
          Length = 495

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 39/89 (43%), Positives = 47/89 (52%)
 Frame = +1

Query: 1   VYIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVAVGLVQGCHRTASXXXXXXXXXXSG 180
           VYIYAPEIYP                   M+CPLVAVGLV GCH+ A+          SG
Sbjct: 407 VYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQAAAVILFEIVIFISG 466

Query: 181 VAVIYFPFETKGCELSDSVLKKTQSKIVI 267
           + VI FPFETKG EL D++    Q   ++
Sbjct: 467 ICVILFPFETKGRELKDTLSSSEQVNSIL 495


>ref|XP_002310345.1| predicted protein [Populus trichocarpa] gi|222853248|gb|EEE90795.1|
           predicted protein [Populus trichocarpa]
          Length = 463

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 37/79 (46%), Positives = 46/79 (58%)
 Frame = +1

Query: 1   VYIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVAVGLVQGCHRTASXXXXXXXXXXSG 180
           VYIYAPE+YP                   MVCPLVAV LVQGCH+TA+          +G
Sbjct: 380 VYIYAPELYPTFMRTTGVGVASSVSRIGGMVCPLVAVSLVQGCHQTAAVVFFASIVFVAG 439

Query: 181 VAVIYFPFETKGCELSDSV 237
           + V+ FPFETKG +L+DS+
Sbjct: 440 ICVLLFPFETKGLDLADSL 458


>emb|CAN64534.1| hypothetical protein VITISV_042940 [Vitis vinifera]
          Length = 461

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 39/89 (43%), Positives = 47/89 (52%)
 Frame = +1

Query: 1   VYIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVAVGLVQGCHRTASXXXXXXXXXXSG 180
           VYIYAPEIYP                   M+CPLVAVGLV GCH+ A+          SG
Sbjct: 373 VYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQAAAVILFEIVIFISG 432

Query: 181 VAVIYFPFETKGCELSDSVLKKTQSKIVI 267
           + VI FPFETKG EL D++    Q   ++
Sbjct: 433 ICVILFPFETKGRELKDTLSSSEQVNSIL 461


>ref|XP_002330449.1| predicted protein [Populus trichocarpa] gi|222871861|gb|EEF08992.1|
           predicted protein [Populus trichocarpa]
          Length = 503

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 38/86 (44%), Positives = 46/86 (53%)
 Frame = +1

Query: 1   VYIYAPEIYPXXXXXXXXXXXXXXXXXXXMVCPLVAVGLVQGCHRTASXXXXXXXXXXSG 180
           V+IYAPEIYP                   M+CPLVAV LVQGCH+TA+          +G
Sbjct: 406 VFIYAPEIYPTSVRSTGIGVASSMGRIGGMICPLVAVSLVQGCHQTAALILFVCIIFVAG 465

Query: 181 VAVIYFPFETKGCELSDSVLKKTQSK 258
             V+ FPFETKG EL+DS+      K
Sbjct: 466 CCVMLFPFETKGLELTDSISSTKNEK 491


Top