BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027930
         (337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280803.2| PREDICTED: pentatricopeptide repeat-containi...   102   3e-20
emb|CBI28050.3| unnamed protein product [Vitis vinifera]              102   3e-20
ref|XP_003532483.1| PREDICTED: pentatricopeptide repeat-containi...    94   9e-18
ref|XP_003630782.1| Pentatricopeptide repeat-containing protein ...    94   1e-17
ref|XP_003630764.1| Pentatricopeptide repeat-containing protein ...    94   1e-17

>ref|XP_002280803.2| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
            mitochondrial-like [Vitis vinifera]
          Length = 816

 Score =  102 bits (254), Expect = 3e-20
 Identities = 54/116 (46%), Positives = 69/116 (59%), Gaps = 5/116 (4%)
 Frame = -3

Query: 335  QVRFSFSDGGPEFNMPPPCSVVIQESEKGHWHIPVELEDGSERERTWLCVTRTDAEGHKS 156
            QV FSFSD GP F+MPPPCSV+IQESE GHWHIPV  E  SE ERTWLCVTR +++  K 
Sbjct: 670  QVHFSFSDSGPVFHMPPPCSVIIQESENGHWHIPVASEHDSEGERTWLCVTRANSQMAKQ 729

Query: 155  TTRQKDHHSKEGC-----ANADAQSRSSMKLPKHGIGGNILKTNQHSMKIYRNLNS 3
            +   ++  S+  C       +D Q+    +L       N  K+     +IYRNL +
Sbjct: 730  SPSPRNKESQYPCYDKRRVRSDTQTEIHKELSSSN-HRNQEKSKAPPQEIYRNLRN 784


>emb|CBI28050.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score =  102 bits (254), Expect = 3e-20
 Identities = 54/116 (46%), Positives = 69/116 (59%), Gaps = 5/116 (4%)
 Frame = -3

Query: 335 QVRFSFSDGGPEFNMPPPCSVVIQESEKGHWHIPVELEDGSERERTWLCVTRTDAEGHKS 156
           QV FSFSD GP F+MPPPCSV+IQESE GHWHIPV  E  SE ERTWLCVTR +++  K 
Sbjct: 605 QVHFSFSDSGPVFHMPPPCSVIIQESENGHWHIPVASEHDSEGERTWLCVTRANSQMAKQ 664

Query: 155 TTRQKDHHSKEGC-----ANADAQSRSSMKLPKHGIGGNILKTNQHSMKIYRNLNS 3
           +   ++  S+  C       +D Q+    +L       N  K+     +IYRNL +
Sbjct: 665 SPSPRNKESQYPCYDKRRVRSDTQTEIHKELSSSN-HRNQEKSKAPPQEIYRNLRN 719


>ref|XP_003532483.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
           mitochondrial-like [Glycine max]
          Length = 724

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 50/112 (44%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
 Frame = -3

Query: 335 QVRFSFSD-GGPEFNMPPPCSVVIQESEKGHWHIPVELEDGSERERTWLCVTRT--DAEG 165
           QVRFSFSD G P F+MPPPCSVVIQESE+GHWHIP++ E   E ER WLC+TR   D   
Sbjct: 578 QVRFSFSDTGSPVFHMPPPCSVVIQESEEGHWHIPIDAELNDESERRWLCITRAKLDVVS 637

Query: 164 HKSTTRQKDHHSKEGCANADAQSRSSMKLPKHGIGGNILKTNQHSMKIYRNL 9
             S+T +     ++G     A   +S K  +H    N  +  +   ++Y+N+
Sbjct: 638 KDSSTSKDSKPLQKGECARSATRNASAKESQHQNLVNHKEKKETPQELYKNV 689


>ref|XP_003630782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355524804|gb|AET05258.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 668

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 52/113 (46%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
 Frame = -3

Query: 335 QVRFSFSDGGPEFNMPPPCSVVIQESEKGHWHIPVELEDGSERERTWLCVTRTDAE---G 165
           QVRF FSD G EF MPPPCSVVIQESE+GHWHIP+E E   E ER WLC+TR   +   G
Sbjct: 555 QVRFGFSDAGLEFYMPPPCSVVIQESEEGHWHIPIEAELNDEAERRWLCITRAKLDMVSG 614

Query: 164 HKSTTRQKDHHSKEG-CANADAQSRSSMKLPKHGIGGN--ILKTNQHSMKIYR 15
             STT + +   + G  A +  +  S+ +L    +  +  ++ T Q S K +R
Sbjct: 615 DSSTTSKDEKPLQNGEQAKSVTRKESAKELQYQNLVNHKKMIGTPQESYKNHR 667


>ref|XP_003630764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355524786|gb|AET05240.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 702

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 52/113 (46%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
 Frame = -3

Query: 335 QVRFSFSDGGPEFNMPPPCSVVIQESEKGHWHIPVELEDGSERERTWLCVTRTDAE---G 165
           QVRF FSD G EF MPPPCSVVIQESE+GHWHIP+E E   E ER WLC+TR   +   G
Sbjct: 589 QVRFGFSDAGLEFYMPPPCSVVIQESEEGHWHIPIEAELNDEAERRWLCITRAKLDMVSG 648

Query: 164 HKSTTRQKDHHSKEG-CANADAQSRSSMKLPKHGIGGN--ILKTNQHSMKIYR 15
             STT + +   + G  A +  +  S+ +L    +  +  ++ T Q S K +R
Sbjct: 649 DSSTTSKDEKPLQNGEQAKSVTRKESAKELQYQNLVNHKKMIGTPQESYKNHR 701