BLASTX nr result

ID: Coptis24_contig00027925 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027925
         (1479 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283806.2| PREDICTED: uncharacterized protein LOC100243...   412   e-113
ref|XP_002511058.1| tyrosyl-DNA phosphodiesterase, putative [Ric...   403   e-110
ref|XP_002318192.1| predicted protein [Populus trichocarpa] gi|2...   391   e-106
emb|CBI20080.3| unnamed protein product [Vitis vinifera]              377   e-102
ref|XP_002871268.1| predicted protein [Arabidopsis lyrata subsp....   366   7e-99

>ref|XP_002283806.2| PREDICTED: uncharacterized protein LOC100243589 [Vitis vinifera]
          Length = 1091

 Score =  412 bits (1060), Expect = e-113
 Identities = 202/349 (57%), Positives = 263/349 (75%), Gaps = 8/349 (2%)
 Frame = -3

Query: 1024 ILESADPISFIRNELSRDNNVPVDTLRQQHCVLISSS-------SGKKFFLNRLQCEEEN 866
            ++ SA P +   N + ++N+      +Q H V+ + +        GKKF+LNRL+    +
Sbjct: 329  VIASAKPKTLSSNSMGKEND------QQFHGVMHNKTWGTSCPPPGKKFYLNRLEFMNYS 382

Query: 865  RLVDDQEEMVVSLPELLHPVESLTRMFIATFTCDILWFLQYCEVPNNLPVTIACHNTKRC 686
                     V+SLPELL PVE+L+R+F+ATFT D+LWFL YC+VP +LPVTIACH+T+RC
Sbjct: 383  ---SSGNHTVISLPELLFPVENLSRIFVATFTSDVLWFLSYCKVPGHLPVTIACHHTERC 439

Query: 685  WSSSPDKRMSAPFENFPNLLVIYPPFPDVIAFGKDRKKQGIACHHPKLLVLQRDSSIRIV 506
            WSSS DKR   P+ ++PNL++++PPFP+ IAFG+DRKK G+ACHHPKLLVLQR+ SIRI+
Sbjct: 440  WSSSADKRAYVPYSDYPNLVIVHPPFPEAIAFGRDRKKLGVACHHPKLLVLQREDSIRII 499

Query: 505  VTSANLVSKQWNSVTNTVWWQDFPRRCQPDYSALFTSTEEGKME-GFKSDFAAQLAGFMA 329
            +TSANLV+KQWNSVTNTVWWQDFPR   PDYS++FT   +G++    +SDFAAQLAGFMA
Sbjct: 500  ITSANLVAKQWNSVTNTVWWQDFPRISPPDYSSIFTQFCDGEINLDSRSDFAAQLAGFMA 559

Query: 328  SLVVDVPSEAYWITELTKYEFGGANGYLIASVPGMHSHKTPYPLESKYFLSGNHCVARLS 149
            SLV+DVPS+A+WI ELTKY+F GA G+L+ASVPG+H H+TP+  +S  FL    C   + 
Sbjct: 560  SLVIDVPSQAHWIMELTKYDFKGATGHLVASVPGIHFHRTPHASKSMQFLHNASCSFGM- 618

Query: 148  RIKFLGSVEASLVGLKHRFHSAADSNGAALKTLAAFLRKCQENEFGMLE 2
              KFLGS+EAS+VGL H FH+AAD+NGA LK LAAFL KC +NE+GM E
Sbjct: 619  --KFLGSIEASIVGLSHLFHTAADANGAHLKKLAAFLGKCHKNEYGMSE 665



 Score =  115 bits (289), Expect = 2e-23
 Identities = 73/165 (44%), Positives = 89/165 (53%), Gaps = 29/165 (17%)
 Frame = -3

Query: 1396 NRLYTIGRNTQYCDIVFNDPRVSNRHCQIFLDGSARKIFIFDGFK--------------I 1259
            +R  TIGR+ Q CD V  D RVS +HCQI  DG  RKIFI DG +              +
Sbjct: 64   DRPCTIGRSHQSCDYVLEDRRVSKQHCQILFDGFHRKIFILDGGRFRTKGDLDKLEETAV 123

Query: 1258 RSSLNGVFANGLRIGEGKFVELSVGDEVNFVCNSSNNHVEKIGFVIERVVFTDLTENKR- 1082
            R SLNG+F NG +IG+    ELS GDEV+FVC +        GF+I+R+VFT+     R 
Sbjct: 124  RPSLNGIFLNGFKIGKDTLKELSAGDEVSFVCQNE----RLAGFLIQRIVFTEEALEGRG 179

Query: 1081 ------LINGDPTG--------RAVFLLNRCRMILESADPISFIR 989
                   IN  PT         RA F L +CR IL S DPIS+IR
Sbjct: 180  EAASSGPINPSPTSESDDLITRRANFYLGQCRCILNSDDPISYIR 224


>ref|XP_002511058.1| tyrosyl-DNA phosphodiesterase, putative [Ricinus communis]
            gi|223550173|gb|EEF51660.1| tyrosyl-DNA
            phosphodiesterase, putative [Ricinus communis]
          Length = 1148

 Score =  403 bits (1036), Expect = e-110
 Identities = 190/304 (62%), Positives = 239/304 (78%), Gaps = 1/304 (0%)
 Frame = -3

Query: 910  GKKFFLNRLQCEEENRLVDDQEEMVVSLPELLHPVESLTRMFIATFTCDILWFLQYCEVP 731
            GKKF+LNRL   E         + VVSLPELLHP+E++ R+FIATFT DILWFL YCE+P
Sbjct: 424  GKKFYLNRLHFMEHGSF---SHQNVVSLPELLHPIENIMRIFIATFTSDILWFLSYCEIP 480

Query: 730  NNLPVTIACHNTKRCWSSSPDKRMSAPFENFPNLLVIYPPFPDVIAFGKDRKKQGIACHH 551
            ++LPVTIACHNT+RCWSS+PDKR+S P+ NFPNL V++PPFP+ IAFG DR++QGIACHH
Sbjct: 481  SHLPVTIACHNTERCWSSNPDKRISMPYSNFPNLSVVFPPFPEAIAFGNDRRRQGIACHH 540

Query: 550  PKLLVLQRDSSIRIVVTSANLVSKQWNSVTNTVWWQDFPRRCQPDYSALFTSTEEGKM-E 374
            PKLLVLQR++SIR+++TSANLV  QW++VTNT+WWQDFPRR  PD S+LFT   +G++ +
Sbjct: 541  PKLLVLQRENSIRVIITSANLVPNQWHNVTNTIWWQDFPRRSTPDLSSLFTRVSDGEISQ 600

Query: 373  GFKSDFAAQLAGFMASLVVDVPSEAYWITELTKYEFGGANGYLIASVPGMHSHKTPYPLE 194
              +SDFAAQLAGF+ASLV+DVPS+A+W+ ELTKY F GA GYL+AS+PG+HS  TPY  +
Sbjct: 601  DSRSDFAAQLAGFIASLVIDVPSQAHWVVELTKYNFDGALGYLVASIPGIHSRGTPYACQ 660

Query: 193  SKYFLSGNHCVARLSRIKFLGSVEASLVGLKHRFHSAADSNGAALKTLAAFLRKCQENEF 14
                        +   +KFLGSVEAS+VGL H FH++ D+NGA LK LAAFL +  EN +
Sbjct: 661  ---------YAMKSIDVKFLGSVEASVVGLSHLFHTSTDTNGALLKKLAAFLGRFPENAY 711

Query: 13   GMLE 2
            GM E
Sbjct: 712  GMSE 715



 Score = 91.3 bits (225), Expect = 6e-16
 Identities = 76/256 (29%), Positives = 103/256 (40%), Gaps = 94/256 (36%)
 Frame = -3

Query: 1474 TGFLHLKSLDXXXXXXXXXXXT---CLNSNRLYTIGRNTQY--CDIVFNDPRVSNRHCQI 1310
            + F+HL+SLD               CL  +R YTIGR++    CD VF+D RVS +HCQI
Sbjct: 45   SAFIHLQSLDVPLISPATGSPLDSICLEPDRPYTIGRSSTDPDCDFVFSDRRVSKQHCQI 104

Query: 1309 FLDGSARKIFIFDG------------------------------------FKIRSSLNGV 1238
              D   RK++I DG                                     +IR S+NGV
Sbjct: 105  LFDSVNRKVYILDGILLLHSISSIRVVSEFRKRLRNYDQLEGEEKEGFECLRIRFSMNGV 164

Query: 1237 FANGLRIGEGKFVELSVGDEVNFVCNSSN--NHVEKIGFVIERVVFTD------------ 1100
            F NG+R+  G   EL  GDEV FVC +    N   +IGF+I+ VVF +            
Sbjct: 165  FINGIRVKRGIVRELCTGDEVLFVCGNEGLCNLGVRIGFLIQGVVFKEEVVIGSNEIQLG 224

Query: 1099 ------------------------------LTENKRLIN---------GDPTGRAVFLLN 1037
                                          +  N+ + N         G    RA FL++
Sbjct: 225  RPCLLGTSSMSVGHSQGSVSSGSRTKRVFAVRANEVMANEYDFLELKLGGIVKRARFLVS 284

Query: 1036 RCRMILESADPISFIR 989
            +CR IL S DPIS+ +
Sbjct: 285  QCRQILHSGDPISYFQ 300


>ref|XP_002318192.1| predicted protein [Populus trichocarpa] gi|222858865|gb|EEE96412.1|
            predicted protein [Populus trichocarpa]
          Length = 1131

 Score =  391 bits (1004), Expect = e-106
 Identities = 193/310 (62%), Positives = 237/310 (76%), Gaps = 7/310 (2%)
 Frame = -3

Query: 910  GKKFFLNRLQCEEENRLVDDQEEMVVSLPELLHPVESLTRMFIATFTCDILWFLQYCEVP 731
            GKKF+LNRLQ  +           V+SLPELL+PVES++R+FIATFT DILWFL +CE+P
Sbjct: 422  GKKFYLNRLQFMDHGSFTHPN---VISLPELLYPVESISRIFIATFTSDILWFLSHCEIP 478

Query: 730  NNLPVTIACHNTKRCWSSSPDKRMSAPFENFPNLLVIYPPFPDVIAFGKDRKKQGIACHH 551
             +LPVTIACHNT+RCWSSSPD R S P+ +FPNL+V++PPFP+ IAFG+DRK++GIACHH
Sbjct: 479  CHLPVTIACHNTERCWSSSPDNRTSVPYSDFPNLVVVFPPFPESIAFGQDRKRRGIACHH 538

Query: 550  PKLLVLQRDSSIRIVVTSANLVSKQ------WNSVTNTVWWQDFPRRCQPDYSALFTSTE 389
            PKLLVLQR+ SIR+++TSANLVS Q      WN+VTNTVWWQDFP R  PD S LF    
Sbjct: 539  PKLLVLQREDSIRVIITSANLVSNQVVAHSKWNNVTNTVWWQDFPARSAPDPSPLFIRVS 598

Query: 388  EGKM-EGFKSDFAAQLAGFMASLVVDVPSEAYWITELTKYEFGGANGYLIASVPGMHSHK 212
            +G   +  +SDFAAQLAGFMA LV++VPS+AYWI+ELTKY+F GANG+L+ASVPG+HS +
Sbjct: 599  DGDANKDSRSDFAAQLAGFMACLVINVPSQAYWISELTKYDFEGANGHLVASVPGIHSRR 658

Query: 211  TPYPLESKYFLSGNHCVARLSRIKFLGSVEASLVGLKHRFHSAADSNGAALKTLAAFLRK 32
            +P   +     SG         ++FLGSVEAS+VGL H FH+AAD NG  LK LAAFL K
Sbjct: 659  SPNAYQLPSGSSG---------VQFLGSVEASVVGLSHLFHTAADRNGTQLKQLAAFLGK 709

Query: 31   CQENEFGMLE 2
            C EN +GM E
Sbjct: 710  CCENVYGMSE 719


>emb|CBI20080.3| unnamed protein product [Vitis vinifera]
          Length = 1032

 Score =  377 bits (968), Expect = e-102
 Identities = 190/355 (53%), Positives = 250/355 (70%), Gaps = 8/355 (2%)
 Frame = -3

Query: 1042 LNRCRMILESADPISFIRNELSRDNNVPVDTLRQQHCVLISSS-------SGKKFFLNRL 884
            LNR  +++  A P +   N + ++N+      +Q H V+ + +        GKKF+LNRL
Sbjct: 283  LNRQSVLVSDAKPKTLSSNSMGKEND------QQFHGVMHNKTWGTSCPPPGKKFYLNRL 336

Query: 883  QCEEENRLVDDQEEMVVSLPELLHPVESLTRMFIATFTCDILWFLQYCEVPNNLPVTIAC 704
            +    +         V+SLPELL PVE+L+R+F+ATFT D+LWFL YC+VP +LPVTIAC
Sbjct: 337  EFMNYS---SSGNHTVISLPELLFPVENLSRIFVATFTSDVLWFLSYCKVPGHLPVTIAC 393

Query: 703  HNTKRCWSSSPDKRMSAPFENFPNLLVIYPPFPDVIAFGKDRKKQGIACHHPKLLVLQRD 524
            H+T+RCWSSS DKR   P+ ++PNL++++PPFP+ IAFG+DRKK G+ACHHPKLLVLQR+
Sbjct: 394  HHTERCWSSSADKRAYVPYSDYPNLVIVHPPFPEAIAFGRDRKKLGVACHHPKLLVLQRE 453

Query: 523  SSIRIVVTSANLVSKQWNSVTNTVWWQDFPRRCQPDYSALFTSTEEGKME-GFKSDFAAQ 347
             SIRI++TSANLV+KQWNSVTNTVWWQDFPR   PDYS++FT   +G++    +SDFAAQ
Sbjct: 454  DSIRIIITSANLVAKQWNSVTNTVWWQDFPRISPPDYSSIFTQFCDGEINLDSRSDFAAQ 513

Query: 346  LAGFMASLVVDVPSEAYWITELTKYEFGGANGYLIASVPGMHSHKTPYPLESKYFLSGNH 167
            LAGFMASLV+DVPS+A+WI ELTKY+F GA G+L+ASVPG+H H+TP+  +S  FL  N 
Sbjct: 514  LAGFMASLVIDVPSQAHWIMELTKYDFKGATGHLVASVPGIHFHRTPHASKSMQFLHAN- 572

Query: 166  CVARLSRIKFLGSVEASLVGLKHRFHSAADSNGAALKTLAAFLRKCQENEFGMLE 2
                                 ++   S AD+NGA LK LAAFL KC +NE+GM E
Sbjct: 573  ---------------------QNASCSFADANGAHLKKLAAFLGKCHKNEYGMSE 606



 Score =  115 bits (289), Expect = 2e-23
 Identities = 73/165 (44%), Positives = 89/165 (53%), Gaps = 29/165 (17%)
 Frame = -3

Query: 1396 NRLYTIGRNTQYCDIVFNDPRVSNRHCQIFLDGSARKIFIFDGFK--------------I 1259
            +R  TIGR+ Q CD V  D RVS +HCQI  DG  RKIFI DG +              +
Sbjct: 55   DRPCTIGRSHQSCDYVLEDRRVSKQHCQILFDGFHRKIFILDGGRFRTKGDLDKLEETAV 114

Query: 1258 RSSLNGVFANGLRIGEGKFVELSVGDEVNFVCNSSNNHVEKIGFVIERVVFTDLTENKR- 1082
            R SLNG+F NG +IG+    ELS GDEV+FVC +        GF+I+R+VFT+     R 
Sbjct: 115  RPSLNGIFLNGFKIGKDTLKELSAGDEVSFVCQNE----RLAGFLIQRIVFTEEALEGRG 170

Query: 1081 ------LINGDPTG--------RAVFLLNRCRMILESADPISFIR 989
                   IN  PT         RA F L +CR IL S DPIS+IR
Sbjct: 171  EAASSGPINPSPTSESDDLITRRANFYLGQCRCILNSDDPISYIR 215


>ref|XP_002871268.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297317105|gb|EFH47527.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 1083

 Score =  366 bits (940), Expect = 7e-99
 Identities = 183/327 (55%), Positives = 232/327 (70%), Gaps = 5/327 (1%)
 Frame = -3

Query: 967  NVP----VDTLRQQHCVLISSSS-GKKFFLNRLQCEEENRLVDDQEEMVVSLPELLHPVE 803
            N+P    +D  +   C L +  + GK F+LNRLQ  E+N       + VVSLPELLHPVE
Sbjct: 342  NIPDISCIDKEKSHLCSLPAPPAPGKNFYLNRLQYIEQN---STGSQRVVSLPELLHPVE 398

Query: 802  SLTRMFIATFTCDILWFLQYCEVPNNLPVTIACHNTKRCWSSSPDKRMSAPFENFPNLLV 623
            S+ ++FIAT T DILWFL  CE+P++LPVTIACH+ +RCWSSSPD R +AP  N+PN+ +
Sbjct: 399  SIQQIFIATLTSDILWFLTCCEIPSHLPVTIACHHAERCWSSSPDARSTAPLPNYPNVTM 458

Query: 622  IYPPFPDVIAFGKDRKKQGIACHHPKLLVLQRDSSIRIVVTSANLVSKQWNSVTNTVWWQ 443
            ++PPFP+ IAFGKDRK +GIACHHPKL +LQR+ SIR+++TSANLV++QWN VTNTVWWQ
Sbjct: 459  VFPPFPEEIAFGKDRKNRGIACHHPKLFILQREVSIRVIITSANLVARQWNDVTNTVWWQ 518

Query: 442  DFPRRCQPDYSALFTSTEEGKMEGFKSDFAAQLAGFMASLVVDVPSEAYWITELTKYEFG 263
            DFPRR  PD  +LF         G K+DF AQLAGF ASL+ DVPS+A+WI E TKY F 
Sbjct: 519  DFPRRADPDVLSLFGHCRRETNHGLKTDFCAQLAGFAASLLTDVPSQAHWIIEFTKYNFE 578

Query: 262  GANGYLIASVPGMHSHKTPYPLESKYFLSGNHCVARLSRIKFLGSVEASLVGLKHRFHSA 83
             +  +L+ASVPG+HS+K  Y  ES        C       +FLGSVEAS+VGL + F SA
Sbjct: 579  HSACHLVASVPGIHSYKPSYLTESV-------CSNTNFNEEFLGSVEASVVGLSYLFRSA 631

Query: 82   ADSNGAALKTLAAFLRKCQENEFGMLE 2
             DS G  LK LA+++R+ +EN  GMLE
Sbjct: 632  NDSTGLQLKRLASYIRRARENSLGMLE 658



 Score = 80.5 bits (197), Expect = 1e-12
 Identities = 62/216 (28%), Positives = 93/216 (43%), Gaps = 70/216 (32%)
 Frame = -3

Query: 1405 LNSNRLYTIGRNTQ--YCDIVFNDPRVSNRHCQIFLDGSARKIFIFDG------------ 1268
            + S+R YT GR++   +CD VF+   +S +HCQI  D  + K++IFDG            
Sbjct: 34   IESDRPYTFGRSSSNGFCDFVFDHSSISRKHCQILFDSQSHKLYIFDGVIVLPSVSFSQV 93

Query: 1267 ----------------FKIRSSLNGVFANGLRIGEGKFVELSVGDEVNFVCNSSN---NH 1145
                             K   SLNGVF N +R+ + K  E+S+GDEV FVC       NH
Sbjct: 94   YDEFRRRLVDFEDLGNLKFSVSLNGVFVNRVRVRKAKIQEVSIGDEVLFVCGKEGLCYNH 153

Query: 1144 VEKIGFVIERV-------------------VFTDLTENKRL-------INGDPTG----- 1058
              ++GF ++ +                    F+    +KR+       IN   +G     
Sbjct: 154  -GRVGFRVQEIDFEGRDTSIISVSSGHSRGTFSSGKRSKRVFAPMENEINSPVSGVCPRK 212

Query: 1057 ------RAVFLLNRCRMILESADPISFIRNELSRDN 968
                  R   L++ CR IL S DP+S +R  +  D+
Sbjct: 213  AVGVAERVNSLVSYCRHILSSDDPMSCLRVSIISDS 248


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