BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027917
         (1065 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277185.1| PREDICTED: ribosome biogenesis GTPase A [Vit...   298   e-114
ref|XP_004143028.1| PREDICTED: ribosome biogenesis GTPase A-like...   283   7e-97
ref|XP_002526350.1| GTP binding protein, putative [Ricinus commu...   259   7e-96
ref|XP_003532888.1| PREDICTED: ribosome biogenesis GTPase A-like...   251   3e-95
ref|NP_192803.4| GTP binding protein [Arabidopsis thaliana] gi|3...   258   9e-94

>ref|XP_002277185.1| PREDICTED: ribosome biogenesis GTPase A [Vitis vinifera]
            gi|297744953|emb|CBI38545.3| unnamed protein product
            [Vitis vinifera]
          Length = 369

 Score =  298 bits (764), Expect(2) = e-114
 Identities = 149/220 (67%), Positives = 182/220 (82%), Gaps = 2/220 (0%)
 Frame = -3

Query: 1054 RSVGAAVMKAGAEKTSTWFTPHMAAASRAIFERIPLVDITLEVRDARIPISSAYEHMRKF 875
            + +G+ V +A      TWF+PHMAAASRA+ ERIPLVD+ LEVRDARIP+SS Y+ +R F
Sbjct: 8    KRLGSGVKRAA----KTWFSPHMAAASRAVSERIPLVDLVLEVRDARIPLSSEYDQLRNF 63

Query: 874  PSSH-RIIVLNKMDLAGRSQTKEWIRHFREQNCICYGINAHNKENVKEFLNFLQARVREL 698
            PSS  RIIVLNKMDLA R + KEW+R+F +QNCI +G+N+HNK+N+KE L FLQA+V+ +
Sbjct: 64   PSSSKRIIVLNKMDLANRLEIKEWMRYFEQQNCISFGVNSHNKDNIKECLKFLQAQVKGV 123

Query: 697  K-FDKSKFTITVMLVGIPNVGKSALANSLHQIGRISAAEKGKLKHATVSPLPGETKDITS 521
            K  D S +T T+MLVGIPNVGKSALANSLHQIGRISAAEKGKLKHATVSP+PGET+DI+S
Sbjct: 124  KKIDHSSYTATIMLVGIPNVGKSALANSLHQIGRISAAEKGKLKHATVSPIPGETRDISS 183

Query: 520  LKIASCPNIYVLDTPGVLHPDSIDIEMGSKLALTGLLSIC 401
            LKI S PN+YVLDTPG+L PD +D+ + SKLALTG +  C
Sbjct: 184  LKIGSHPNVYVLDTPGILPPDILDVVVCSKLALTGAIKDC 223



 Score =  140 bits (354), Expect(2) = e-114
 Identities = 73/136 (53%), Positives = 99/136 (72%), Gaps = 1/136 (0%)
 Frame = -2

Query: 416 LAQYLLAILNLSGEHKRWESLISKEDDCLSIEHNAK-LSDSVGSNMKKKIFCTDHTQDFV 240
           LAQY L+ILN S E+K+WE L ++E++  +I+     L  S   + +K+ + TDHTQDFV
Sbjct: 230 LAQYFLSILNRSDEYKKWEKLSAEENEISTIDQRVGCLGSSELDSRQKRQYPTDHTQDFV 289

Query: 239 VQDVRRTLFKTISSFEGNVEEANYLASLIDSQLVALRDAFRVCSESDDDILHSVPTKLLN 60
           V++VRR LF+TISSF G++E+   L+ LI++Q  ALR+AFRV SES +D+ + V  KLLN
Sbjct: 290 VREVRRVLFETISSFPGSLEKEKDLSRLIETQFTALREAFRVASESGEDVENKVAAKLLN 349

Query: 59  LYRIGRLGHYILDIVP 12
           LYR GRLGHY LD VP
Sbjct: 350 LYRTGRLGHYTLDSVP 365


>ref|XP_004143028.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
            gi|449482814|ref|XP_004156412.1| PREDICTED: ribosome
            biogenesis GTPase A-like [Cucumis sativus]
          Length = 366

 Score =  283 bits (723), Expect(2) = 7e-97
 Identities = 151/219 (68%), Positives = 171/219 (78%), Gaps = 4/219 (1%)
 Frame = -3

Query: 1054 RSVGAAV--MKAGAEKTSTWFTPHMAAASRAIFERIPLVDITLEVRDARIPISSAYEHMR 881
            R +G A+  + AG   +S W+  HM AASRA+ ERIPLVD  LEVRDARIP SS YE M+
Sbjct: 8    RKIGTAINQLAAGNRISSGWYDAHMEAASRAVAERIPLVDFVLEVRDARIPTSSEYEMMK 67

Query: 880  KFP-SSHRIIVLNKMDLAGRSQTKEWIRHFREQNCICYGINAHNKENVKEFLNFLQARVR 704
              P SS RIIVLNK DLA +SQT+ W RHF + NCI YG+N+HNKEN++EFLNFLQARVR
Sbjct: 68   NHPPSSKRIIVLNKTDLADQSQTEVWTRHFEDHNCISYGVNSHNKENIREFLNFLQARVR 127

Query: 703  ELKFD-KSKFTITVMLVGIPNVGKSALANSLHQIGRISAAEKGKLKHATVSPLPGETKDI 527
            ELK    S    T+MLVGIPNVGKSALANSLHQIGRISAAEKGKLKHA VS  PGETK+I
Sbjct: 128  ELKKSGHSSHATTMMLVGIPNVGKSALANSLHQIGRISAAEKGKLKHAVVSSQPGETKNI 187

Query: 526  TSLKIASCPNIYVLDTPGVLHPDSIDIEMGSKLALTGLL 410
            +SLKIAS PNIYVLDTPG+  P   DIE+ SKLALTG +
Sbjct: 188  SSLKIASHPNIYVLDTPGIFPPKIDDIEVCSKLALTGAI 226



 Score = 99.0 bits (245), Expect(2) = 7e-97
 Identities = 57/137 (41%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
 Frame = -2

Query: 416 LAQYLLAILNLSGEHKRWESLISKEDDCLSIEHNAKLSDSVGSNMKK--KIFCTDHTQDF 243
           + QYLL I+N S ++K+W +L +   +C           S  SN++K  + + +DHTQD 
Sbjct: 236 IVQYLLTIVNSSVKYKKWANLSAISLEC-----------STPSNLEKQRRRYPSDHTQDI 284

Query: 242 VVQDVRRTLFKTISSFEGNVEEANYLASLIDSQLVALRDAFRVCSESDDDILHSVPTKLL 63
            V +VRR LF+T SSF+GN+E+   + SLI++QL  L  A  V  +  ++    V  KLL
Sbjct: 285 TVNEVRRALFETRSSFDGNLEDEKEMGSLIETQLHTLHKALHVPMDFCNNATIKVAAKLL 344

Query: 62  NLYRIGRLGHYILDIVP 12
           NLYR GRLG Y LD +P
Sbjct: 345 NLYRTGRLGRYTLDSLP 361


>ref|XP_002526350.1| GTP binding protein, putative [Ricinus communis]
            gi|223534309|gb|EEF36021.1| GTP binding protein, putative
            [Ricinus communis]
          Length = 373

 Score =  259 bits (662), Expect(2) = 7e-96
 Identities = 141/223 (63%), Positives = 164/223 (73%), Gaps = 9/223 (4%)
 Frame = -3

Query: 1057 ARSVGAAVMKAGAEKTSTWFTPHMAAASRAIFERIPLVDITLEVRDARIPISSAYEHMRK 878
            A  +G  VMKA   +   W+ PHMAAAS AI ERI LVD  +EVRDARIP+SS  + +  
Sbjct: 3    ASEIGKRVMKASRNREQRWYNPHMAAASSAIAERISLVDFVIEVRDARIPLSSECQLLTN 62

Query: 877  FP-SSHRIIVLNKMDLAGRSQTKEWIRHFREQNCICYGINAHNKENVKEFLNFLQARVRE 701
               SS RIIV+NKMDLA R Q K+WI++F+++  + Y IN+HNK+NVKEFLNFLQ +VR 
Sbjct: 63   HSDSSRRIIVMNKMDLANRLQLKDWIKYFKQRGFVSYAINSHNKDNVKEFLNFLQGQVRG 122

Query: 700  LK-FDKSKFTITVMLVGIPNVGKSALANSLHQIGRISAAEKGKLKHATVSPLPGETKDIT 524
            LK  D S  TIT+M+VGIPNVGKSALA SLH IGRISAAEKGKLKHA V+P PGETKDI+
Sbjct: 123  LKNIDHSGCTITMMMVGIPNVGKSALAKSLHHIGRISAAEKGKLKHAKVTPHPGETKDIS 182

Query: 523  SLK-------IASCPNIYVLDTPGVLHPDSIDIEMGSKLALTG 416
            SLK       I S PNIYVLDTPGVL P   D E+  KLALTG
Sbjct: 183  SLKACSLSLIIGSHPNIYVLDTPGVLPPQIFDAEVCFKLALTG 225



 Score =  119 bits (297), Expect(2) = 7e-96
 Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
 Frame = -2

Query: 416 LAQYLLAILNLSGEHKRWESLISKEDDCLSIEHNAK-LSDSVGSNMKKKIFCTDHTQDFV 240
           LAQY LAILNLS E+K+W  L ++E +    ++ A+ L D       KK   TDHTQDF+
Sbjct: 237 LAQYFLAILNLSDEYKKWAKLSAREKEKSFTDNKAECLRDKQLDTEGKKEHLTDHTQDFI 296

Query: 239 VQDVRRTLFKTISSFEGNVEEANYLASLIDSQLVALRDAFRVCSESDDDILHSVPTKLLN 60
           V   RR LF+T+SSF+G+V+    L  LI+ Q+ AL + F +  + +DD    V TKLLN
Sbjct: 297 VHCARRKLFETVSSFDGDVQNEVDLQKLIELQVAALTETFHLPLDLEDDACSKVATKLLN 356

Query: 59  LYRIGRLGHYILD 21
           LYR GRLGHY LD
Sbjct: 357 LYRTGRLGHYTLD 369


>ref|XP_003532888.1| PREDICTED: ribosome biogenesis GTPase A-like [Glycine max]
          Length = 399

 Score =  251 bits (640), Expect(2) = 3e-95
 Identities = 132/225 (58%), Positives = 159/225 (70%), Gaps = 4/225 (1%)
 Frame = -3

Query: 1063 RYARSVGAAVMKAGAEKTSTWFTPHMAAASRAIFERIPLVDITLEVRDARIPISSAYEHM 884
            R  R VG    +        W  P  AAASRAI ERIPL D+ ++VRDARIP+SS  E +
Sbjct: 28   RLGRRVGTTAKEELRRNKGAWRDPLPAAASRAIAERIPLADLVVQVRDARIPLSSECEIL 87

Query: 883  RKFPSS-HRIIVLNKMDLAGRSQTKEWIRHFREQNCICYGINAHNKENVKEFLNFLQARV 707
            R +P S  +I+ LNKMDL G S  K W+ +FRE+NCI  G+NAHNKEN+K+ L+ +Q RV
Sbjct: 88   RNYPPSLKQIVALNKMDLVGTSNVKAWMGYFRERNCISCGVNAHNKENIKQLLSLIQRRV 147

Query: 706  RELKFDK---SKFTITVMLVGIPNVGKSALANSLHQIGRISAAEKGKLKHATVSPLPGET 536
             ELK      + +T TVMLVGIPNVGKSAL N+LHQ+GRISAAEKGKLKHATVSP PGET
Sbjct: 148  SELKGADQCDNNYTATVMLVGIPNVGKSALVNALHQVGRISAAEKGKLKHATVSPEPGET 207

Query: 535  KDITSLKIASCPNIYVLDTPGVLHPDSIDIEMGSKLALTGLLSIC 401
            KDI S KI S PNIYVLDTP +L P   ++++ SKL LTG +  C
Sbjct: 208  KDIRSFKIGSHPNIYVLDTPAILSPKVPNVDILSKLILTGAIGDC 252



 Score =  125 bits (314), Expect(2) = 3e-95
 Identities = 72/138 (52%), Positives = 93/138 (67%), Gaps = 2/138 (1%)
 Frame = -2

Query: 416 LAQYLLAILNLSGEHKRWESLISKEDDCLSIEHNAKLSDSVGSNMK-KKIFCTDHTQDFV 240
           +AQ+ LAI N S ++K+W  L  K++D L +    +   S G +MK K    TDHTQD V
Sbjct: 259 VAQHFLAIHNSSEQYKKWAKLSMKDNDRLFLNGTTEQLTSSGLHMKHKNQIPTDHTQDCV 318

Query: 239 VQDVRRTLFKTISSFEGNVEEANYLASLIDSQLVALRDAFRVCSESDDDILH-SVPTKLL 63
           VQDVRRTLF+TISSFEG+V   + + +LI  Q  AL++AF V  ES++D  H  V  KLL
Sbjct: 319 VQDVRRTLFETISSFEGDVRCEDEMEALIARQFTALQEAFHVSIESEEDDAHDKVAGKLL 378

Query: 62  NLYRIGRLGHYILDIVPG 9
           NL+R GRLGHYILD +PG
Sbjct: 379 NLFRTGRLGHYILDNLPG 396


>ref|NP_192803.4| GTP binding protein [Arabidopsis thaliana] gi|3600035|gb|AAC35523.1|
            contains similarity to GTP-binding proteins [Arabidopsis
            thaliana] gi|332657513|gb|AEE82913.1| GTP binding protein
            [Arabidopsis thaliana]
          Length = 377

 Score =  258 bits (658), Expect(2) = 9e-94
 Identities = 137/221 (61%), Positives = 166/221 (75%), Gaps = 3/221 (1%)
 Frame = -3

Query: 1063 RYARSVGAAVMKAGAEKTSTWFTPHMAAASRAIFERIPLVDITLEVRDARIPISSAYEHM 884
            + AR +G AV+KA       W+ PHMAAA RAI ERIPLVD  LE+RDARIP+SS YE +
Sbjct: 8    KIAREIGDAVIKASRNPNRRWYGPHMAAAVRAISERIPLVDFVLEIRDARIPLSSEYELL 67

Query: 883  RKFPS--SHRIIVLNKMDLAGRSQTKEWIRHFREQNCICYGINAHNKENVKEFLNFLQAR 710
            RKF    S RIIVLNKM+LA   + K+ I +F E+N + Y +N+HNK+ VK+ LNFLQ++
Sbjct: 68   RKFSPLPSKRIIVLNKMELADPLELKKCIDYFEERNYLSYAVNSHNKDCVKQLLNFLQSQ 127

Query: 709  VREL-KFDKSKFTITVMLVGIPNVGKSALANSLHQIGRISAAEKGKLKHATVSPLPGETK 533
            VREL K   S  T T+ML+GIPNVGKSAL+NSLH IGRISAAEKGKLKH TVS  PG+TK
Sbjct: 128  VRELHKAGHSGHTTTMMLLGIPNVGKSALSNSLHHIGRISAAEKGKLKHTTVSSQPGDTK 187

Query: 532  DITSLKIASCPNIYVLDTPGVLHPDSIDIEMGSKLALTGLL 410
            DI SLKI S PN+YVLDTPG+  P+  D E+ +KLALTG +
Sbjct: 188  DIMSLKIGSHPNVYVLDTPGIFPPNLYDAEICAKLALTGAI 228



 Score =  113 bits (283), Expect(2) = 9e-94
 Identities = 60/135 (44%), Positives = 86/135 (63%)
 Frame = -2

Query: 419 RLAQYLLAILNLSGEHKRWESLISKEDDCLSIEHNAKLSDSVGSNMKKKIFCTDHTQDFV 240
           +LA+  L ILN S E+K+W  L   +D   S+   +  SD+      K+ + TDHTQDF+
Sbjct: 237 KLARLFLTILNSSHEYKKWAKLCKSQDLTESLSDESSKSDA----KHKRQYATDHTQDFI 292

Query: 239 VQDVRRTLFKTISSFEGNVEEANYLASLIDSQLVALRDAFRVCSESDDDILHSVPTKLLN 60
           V DVRR L++TIS+F+GN+E+   + +LI++Q  ALR   RV  E+ +     V +K+LN
Sbjct: 293 VYDVRRVLYETISAFDGNLEDEISMGNLIETQFAALRSVLRVPEEASEFADLRVASKILN 352

Query: 59  LYRIGRLGHYILDIV 15
           LYR GRLGHY L+ V
Sbjct: 353 LYRTGRLGHYTLEHV 367