BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027848
         (296 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003627685.1| Pentatricopeptide repeat-containing protein ...    70   2e-10
ref|XP_002524479.1| pentatricopeptide repeat-containing protein,...    69   4e-10
ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containi...    59   4e-07
emb|CBI28186.3| unnamed protein product [Vitis vinifera]               56   3e-06
ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containi...    56   3e-06

>ref|XP_003627685.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|358344437|ref|XP_003636296.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|358345563|ref|XP_003636846.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|355502231|gb|AES83434.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|355502781|gb|AES83984.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|355521707|gb|AET02161.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 791

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 40/92 (43%), Positives = 58/92 (63%)
 Frame = +1

Query: 13  RFKNFTKPTKLHLSTLANFKHYDNTHQNDHQLFEKNPQPNHAAIHRSMLSSLHQNQAFEA 192
           +F N  K T L  S     K + +  +++H LFEK PQPN ++I+RSML+ LH+N  F+A
Sbjct: 10  KFLNVHKTT-LQRSFKTCLKLFHSLKKHEHNLFEKIPQPNASSINRSMLNFLHKNLPFQA 68

Query: 193 LQILKNQITLGGGPPAVDEVSIAIGLKACRGD 288
           L + KNQ T       +DEV++A+  KACRG+
Sbjct: 69  LSVFKNQ-TQFPFLQNIDEVTLALSFKACRGE 99


>ref|XP_002524479.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536267|gb|EEF37919.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 576

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 34/69 (49%), Positives = 48/69 (69%)
 Frame = +1

Query: 82  NTHQNDHQLFEKNPQPNHAAIHRSMLSSLHQNQAFEALQILKNQITLGGGPPAVDEVSIA 261
           +T+ N +QL +KN QPN  +IHRSML S+H+N  F+AL+I K  I       ++DEV+IA
Sbjct: 26  HTYNNAYQLLDKNSQPNSVSIHRSMLDSIHKNLPFQALKIFKKNIQFDFF-NSIDEVTIA 84

Query: 262 IGLKACRGD 288
           + LK+C GD
Sbjct: 85  LALKSCCGD 93


>ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Glycine max]
          Length = 895

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 33/87 (37%), Positives = 49/87 (56%)
 Frame = +1

Query: 34  PTKLHLSTLANFKHYDNTHQNDHQLFEKNPQPNHAAIHRSMLSSLHQNQAFEALQILKNQ 213
           P +L     + F H     ++DH  F+  P PN A+++ SML+ LH    F+AL   KN 
Sbjct: 12  PLQLSFRLCSKFFH---ALKHDHHQFDFIPHPNAASVNHSMLNCLHSRLPFQALTAFKNH 68

Query: 214 ITLGGGPPAVDEVSIAIGLKACRGDTK 294
             L      VDEV++A+ LKAC+G++K
Sbjct: 69  FQL-HSLENVDEVTVALSLKACQGESK 94


>emb|CBI28186.3| unnamed protein product [Vitis vinifera]
          Length = 760

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/73 (39%), Positives = 50/73 (68%)
 Frame = +1

Query: 76  YDNTHQNDHQLFEKNPQPNHAAIHRSMLSSLHQNQAFEALQILKNQITLGGGPPAVDEVS 255
           Y ++ ++ HQ  +++PQ   A+++RSML++L +N + EAL + K Q+   G    +D+V+
Sbjct: 24  YFHSSKHVHQPLDQSPQTTIASLNRSMLTALRRNLSLEALDLFKKQLQ-WGFVGNIDQVT 82

Query: 256 IAIGLKACRGDTK 294
           +AI LKAC GD+K
Sbjct: 83  VAIVLKACCGDSK 95


>ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/73 (39%), Positives = 50/73 (68%)
 Frame = +1

Query: 76  YDNTHQNDHQLFEKNPQPNHAAIHRSMLSSLHQNQAFEALQILKNQITLGGGPPAVDEVS 255
           Y ++ ++ HQ  +++PQ   A+++RSML++L +N + EAL + K Q+   G    +D+V+
Sbjct: 24  YFHSSKHVHQPLDQSPQTTIASLNRSMLTALRRNLSLEALDLFKKQLQ-WGFVGNIDQVT 82

Query: 256 IAIGLKACRGDTK 294
           +AI LKAC GD+K
Sbjct: 83  VAIVLKACCGDSK 95